ZMP
lhx1a
Ensembl ID:
ZFIN ID:
Description:
LIM/homeobox protein Lhx1 [Source:UniProtKB/Swiss-Prot;Acc:Q90476]
Human Orthologue:
LHX1
Human Description:
LIM homeobox 1 [Source:HGNC Symbol;Acc:6593]
Mouse Orthologue:
Lhx1
Mouse Description:
LIM homeobox protein 1 Gene [Source:MGI Symbol;Acc:MGI:99783]
Alleles
There are 4 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa15189 | Nonsense | Available for shipment | Available now |
| sa15800 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa15189
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000005641 | Nonsense | 22 | 405 | 1 | 5 |
| ENSDART00000134373 | Nonsense | 22 | 97 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 15 (position 27059150)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 15 | 27777390 |
| GRCz11 | 15 | 27710266 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CGGGCTGCGAGAGGCCTATATTGGACAGGTTTCTCCTTAATGTTCTGGAC[A/T]GAGCATGGCACAKCAAGTGCGTACAGTGCTGCGAGTGCAAATGTAACCTA
Long Flanking Sequence:
ACTTTAATGCACATCCTCACCAATGCTTCACCTTGTTGACAACGACGACGTGCTTTTCACGCAATGATGTGCTTACCTTTGTAGCCAACGAACAGTTGGTGTTTTGAAAGATTTCTCTATGCTGGCTTCATTTATGCACCTCAAAATTTGGGACGGAAGAGGACGAGAAATGATGACTGACTACTGAAGCACTACCTCATGAGAAAATCTTCTATCGTCTTCATTTTGGACCCCTACAGGTCCACCCACAAACGCAGAACTGGTGAATATATTTAAAACTTCTTCATCTTTTCGTTTCAACCCTGTTCGCAAAGACTGACTTGGAACATCCTTCAGCGATACAACTTTTCCTCCTCTCTTTTAAAAGAGAGAAATCAGGAGCAGAGCCTCAGGTTGTGGACACCACGGCAGTAACTGTGGGAGCACATCCAAAGACGATGGTCCACTGTGCGGGCTGCGAGAGGCCTATATTGGACAGGTTTCTCCTTAATGTTCTGGAC[A/T]GAGCATGGCACATCAAGTGCGTACAGTGCTGCGAGTGCAAATGTAACCTAACAGAGAAATGCTTCTCTCGAGAAGGAAAACTATATTGCAAAAACGACTTCTTTAGGTAAGTTCCTTGCGTGAGTTAATTCGACCAAATATTTTACTTGTGGGGTTTTTGTGATAAATGGATAATTAATCGTTTATAAAGTAGCTATTATGTAGGCCCACTTCAGAAAATCTAGTACAGATGTCTACCATAATAATACAAATATTCTACGAACAAGATGAATATATTACCCGTTGTTGTGTATCTATGGTATATCTATGAAACATTTCTATATAAAATATATAATGTATCGTTAATATATGACAGAAATAAATCCAGAAGACACCCAAAATTATTTCATTTTAAAATTACACATTTACATTTTAAAGAGGTTCCACAATTGAGCTTAAAACAACATCACTTTAAAAGGTGAAATCACATTTTTTAAAGTCACTCAAAAATAACTAAATTG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15800
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000005641 | Nonsense | 114 | 405 | 2 | 5 |
| ENSDART00000134373 | None | None | 97 | None | 3 |
Genomic Location (Zv9):
Chromosome 15 (position 27057573)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 15 | 27775813 |
| GRCz11 | 15 | 27708689 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTTTCCACAGGAGAGGAATTGTACATCATAGAYGAAAATAAATTTGWCTG[T/A]AAAGAYGATTATTTAAGCAACACGAAYGGAAAAGACTCAAATCTCCTATC
Long Flanking Sequence:
TTTAATGCACATTACTAACCTGCTCAATAAACGTATATGTTTTTTTAGGCCTACAGTGGAAAAAAAGTACATGCTAATGCATATATAAATATTATTTTGTTTGCGTATTCTAAAATGCTGTAACCAATAACAATTAACCAGGTAAATATTTTTCCCAAAAAATAACTTTGATGGTAATACTTAACATTTAGGAGCATTCGAATTTTATATGAACTCAAATAAGTGATGCTATTCAATAAGTCTCGCCTGAGCTTATGCAGATAATTTCGTATTTTTCTTTCGTTTTACTCCTGTATATTGACCTTTTTTTTGGTCTGTCCATTTTGCAGGCGCTTTGGAACAAAATGTGCGGGTTGTGCTCAGGGGATCTCGCCGAATGACTTGGTCCGGAGGGCACGGAGCAAAGTGTTTCATCTGAACTGCTTCACATGCATGATGTGTAACAAGCAGCTTTCCACAGGAGAGGAATTGTACATCATAGACGAAAATAAATTTGTCTG[T/A]AAAGACGATTATTTAAGCAACACGAACGGAAAAGACTCAAATCTCCTATCAGGTAAGTAAATGATGCTAGAATTGAAAATATGTATTGCATGCTGCAAGCGGGTTTATTTCCCCCCACATATTTTTTGCTTTTTGATTAAATGTTTATTAGCAATTCATATTTTGTTGTAAAACATTTTTTAAACAATAAAGACAAATATTGTTCAGAATAGGGCTGTAGATTGAAATGTTTTGTTTTCTTAAACAGTACACTAAAATAGATCTTCAGATGGGGCACGACAATCTAAACAAGCTTGTTTAGAATTTTCTCTACCAATTTCCATGTCAAATGAATTGCATTAAATTAGTAGCCTATCGCGATGTTGGTCAGTTTATTTACTAATAATAATTTCACTGTCGTAGACTAGTGCATCGTGACAGTTCTTTCAACTGTAAATACCATTATTTCTTTGTTCCTTGTTTGTAGATTAATTTCTTTTTTTATTCTTTCGAAATTTGTT
Associated Phenotype:
Not determined