ZMP

lrrc40

Ensembl ID:

ENSDARG00000017708

ZFIN ID:

ZDB-GENE-030131-6062

Description:

Leucine-rich repeat-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q7SXW3]

Human Orthologue:

LRRC40

Human Description:

leucine rich repeat containing 40 [Source:HGNC Symbol;Acc:26004]

Mouse Orthologue:

Lrrc40

Mouse Description:

leucine rich repeat containing 40 Gene [Source:MGI Symbol;Acc:MGI:1914394]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa14971	Essential Splice Site	Available for shipment	Available now
sa10669	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa14971

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

G > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000022586	Essential Splice Site	49	601	2	15

The following transcripts of ENSDARG00000017708 do not overlap with this mutation:

Genomic Location (Zv9):

Chromosome 6 (position 29828043)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	6	30123686
GRCz11	6	30114247

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GNNNNNNTAATCATGATATTTTGGTGATKGTTATTAATGGTATTTGTTCA[G/A]TTCCTGCTAGTGTATGGAGGTTGAACTTAGACACACCYCAGGAAGCCAGNNNNNN

Long Flanking Sequence:

TGTTTACAATTGTTTACTTCACAACACTACAACCTCATTCAAGTATACAGGTGCTTTAACATCGCATTGATGTCTCGTTTTAAAAGAGGAGCACACGTGGACTCCAGAGCAGGATTCAGACAAGAGAAGGAAGACTGTCCTGTTCCGTATGGCTTACTGAAAGCTGCTAGAAAGAGCGGGCAGCTCAATCTGTCCGGGCGCGGTCTAACCGAAGGTAAGTTAACGTTACTGTAACGGTAACAGTCCTGGAGCAACACTTCAAACACACTTCAGTGACAAAATGTTAAACTTTATGCAGTAACTATCATTTGAGGCCTCGGAACAGCACATAACAGATATAAACGTTGACTTCGACGTGATTTAAATTCCAAAGATGTTTCTGAAAGAGACATCTGTCTCCTAAACTTTGAAATGTCGTGGCTTACCGTAATAACAATAATTGCTGTAGGGGTAACGTTAATCATGATATTTTGGTGATTGTTATTAATGGTATTTGTTCA[G/A]TTCCTGCTAGTGTATGGAGGTTGAACTTAGACACACCTCAGGAAGCCAAGCAAAATGTGTCTTTTGGAGCTGAAGATCGGTGGTGGGAACAGACTGATCTGACCAAACTGCTTCTGTCCTCCAACAAACTCCAGAGCATCCCTGATGATGTTAAACTTCTGCCTGCCCTGGTGGTCCTTGATGTAGGTTTCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCATTAAAATGAATATAAAAATAAACAACTAAATATTAAATGAAATTACAATAGTTATTAACAATTTTGACTCCCCAATATGTAGATATGAATTGTGGTGCATTTCATTGTTTTTTATTTATTTATACGACTCTTTTTTTTGTTTAGCCTTTAATTAAAAAAAAAGAAAAAAAATATGTAGTGTGTGTGTGTGTGTGTGTATCGATGTATAATGTCAAACACATTAGAATATAAAATATATTTTGTATATGTTCTGTTAACATA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa10669

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000022586	Nonsense	79	601	2	15

The following transcripts of ENSDARG00000017708 do not overlap with this mutation:

Genomic Location (Zv9):

Chromosome 6 (position 29828133)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	6	30123776
GRCz11	6	30114337

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

AGGAAGCCAAGCAAAATRTKTCTTTTGGAGCTGAAGATCGGTGGTGGGAA[C/T]AGACTGATCTGACCAAACTGCTTCTGTCCTCCAACAAACTCCAGAGCATC

Long Flanking Sequence:

GCACACGTGGACTCCAGAGCAGGATTCAGACAAGAGAAGGAAGACTGTCCTGTTCCGTATGGCTTACTGAAAGCTGCTAGAAAGAGCGGGCAGCTCAATCTGTCCGGGCGCGGTCTAACCGAAGGTAAGTTAACGTTACTGTAACGGTAACAGTCCTGGAGCAACACTTCAAACACACTTCAGTGACAAAATGTTAAACTTTATGCAGTAACTATCATTTGAGGCCTCGGAACAGCACATAACAGATATAAACGTTGACTTCGACGTGATTTAAATTCCAAAGATGTTTCTGAAAGAGACATCTGTCTCCTAAACTTTGAAATGTCGTGGCTTACCGTAATAACAATAATTGCTGTAGGGGTAACGTTAATCATGATATTTTGGTGATTGTTATTAATGGTATTTGTTCAGTTCCTGCTAGTGTATGGAGGTTGAACTTAGACACACCTCAGGAAGCCAAGCAAAATGTGTCTTTTGGAGCTGAAGATCGGTGGTGGGAA[C/T]AGACTGATCTGACCAAACTGCTTCTGTCCTCCAACAAACTCCAGAGCATCCCTGATGATGTTAAACTTCTGCCTGCCCTGGTGGTCCTTGATGTAGGTTTCTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCATTAAAATGAATATAAAAATAAACAACTAAATATTAAATGAAATTACAATAGTTATTAACAATTTTGACTCCCCAATATGTAGATATGAATTGTGGTGCATTTCATTGTTTTTTATTTATTTATACGACTCTTTTTTTTGTTTAGCCTTTAATTAAAAAAAAAGAAAAAAAATATGTAGTGTGTGTGTGTGTGTGTGTATCGATGTATAATGTCAAACACATTAGAATATAAAATATATTTTGTATATGTTCTGTTAACATAATACAAATCACTTTATAATTAGTAATGTCTATTTCAGTTAATTTGGACAACTTTAAAGGCAAATTTCTTCGTATTTAGATATTTTAGATT

Associated Phenotype:

Not determined