ZMP
ddx41
Ensembl ID:
ZFIN ID:
Description:
probable ATP-dependent RNA helicase DDX41 [Source:RefSeq peptide;Acc:NP_957339]
Human Orthologue:
DDX41
Human Description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 [Source:HGNC Symbol;Acc:18674]
Mouse Orthologue:
Ddx41
Mouse Description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 Gene [Source:MGI Symbol;Acc:MGI:1920185]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa14887 | Nonsense | Available for shipment | Available now |
| sa6359 | Nonsense | Confirmed mutation in F2 line | Not yet available |
Mutation Details
Allele Name:
sa14887
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061987 | Nonsense | 274 | 473 | 8 | 13 |
| ENSDART00000130634 | None | None | 171 | None | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 52010029)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | KN150642.1 | 48020 |
| GRCz11 | KN150642.1 | 48020 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTGTGTTTTAGGAAGTGGAGTACGTGAAAGAAGAGGCCAAGATGGTTTA[T/A]CTGCTGGAGTGTCTTCAGAAAACCCCACCGCCGGTAYGCAGACGCTCGCT
Long Flanking Sequence:
TTTATTTATTTTACTTTATTTTTTATATTTATTTATTGTTTTTAATTTATGCATTATTTTATTTATTTATTTATTTTACTCTATTTTTGTATTTATTTATTTTTTTAATTATGTATTATTTTATTTATTTTACTTTATTTTTGTATTTATGTATTGTTTTTAATGAATGCATTATTTTATTTATTTATTTATTTTTGTATTTATTTATTATCTAATGTATTTATTTTATTTTTGTATTTATTTAGTCTTATGTATGTATTTATTTTATTTTTTGTATTTACTTATTGCTTTAATTTGTATAATTTTATTTATATAACATTTTAGCATTTATTCATTGTTTTAATTTAAAGTAACATAATTCATAATATTACTCTATTAAAGTAAGCTTTAGTGATCAGAAAGAGACTTTATTAAACAGAAAACATAATAAAATATAAACATTAATGTGTGTTTGTGTTTTAGGAAGTGGAGTACGTGAAAGAAGAGGCCAAGATGGTTTA[T/A]CTGCTGGAGTGTCTTCAGAAAACCCCACCGCCGGTACGCAGACGCTCGCTGCTCTTATTATATCCTCAGAAACGCATAAATAACCTTTCTTTCTTCCTGTTTCTCAGGTATTGATATTTGCAGAGAAGAAAGCAGATGTGGATGCAATACACGAGTATCTGCTGCTAAAAGGTGTGGAGGCCGTGGCCATTCATGGAGGAAAAGGTACAAAAATCATCATCTGAATTACAGCTGCATGGTATTGGAATAAAAACTTTACATTGCAGTATTGTTTTACTCTATGATTATAAATACAATTTCACCAGGTGACTTAAATAGATCTATTTGCAGTTAGGTCTGTTACAATAATCAATATATGGACTTATCGCACAACACATGGACATGACCTCAATTATTTTTAGGGATGCAATATACACTCACCGGCCACTTAATTAGGTACACATTACTAGTACCGGGTTGGACCCCTTTTGCCTTAAGAACTGCCTTAATCCTTCATGGCA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa6359
Status:
Confirmed mutation in F2 line
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > G
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000061987 | Nonsense | 358 | 473 | 10 | 13 |
| ENSDART00000130634 | None | None | 171 | None | 5 |
Genomic Location (Zv9):
Chromosome 14 (position 52006398)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | KN150642.1 | 44389 |
| GRCz11 | KN150642.1 | 44389 |
KASP Assay ID:
554-5123.1 (used for ordering genotyping assays)
KASP Sequence:
GTCGCTTCCAAGGGTCWGGATTTCCCAGCTATACAGCATGTAGTCAATTA[T/G]GACATGCCGGAGGAGATCRAGAACTACGGTAGGTGTTTTTCTTAGTGCTA
Long Flanking Sequence:
GTTGCTCAGTTGTTTGATCTCTTGTTTCTCTGGTTGGGCTGTGTTAATACACTCTGGATGCTGTAAAAACACACACACACACAGACACACACACAAACACACACACACACACACACACACACACACATACAAAAAATTAAAAGCTGCTTTTACTCTAGCCAAAATAAAACAAATAAGACTATCTCCAGTAGAACAAATATTAGAGGAAATAAAATACTGTGAAAAATCTTGGTGCTCCATTAAATATCACATGAATATTTGTAAAAGAATAAATATTTCACGGGAGGGTGAATAGTTTTGACTTTATATAGTAGTTTCCGACTGGTTAACACAAAGATCAACAACTCTATTTATAATAAACTCTATTTGTGCTTTTCAGATCAGGAAGAAAGAACCAAAGCCATCGAGGCCTTCAAAGAGGGAAAGAAAGATGTTTTAGTGGCCACAGACGTCGCTTCCAAGGGTCTGGATTTCCCAGCTATACAGCATGTAGTCAATTA[T/G]GACATGCCGGAGGAGATCGAGAACTACGGTAGGTGTTTTTCTTAGTGCTATTGTTTATTTCATGTCTTAAAGGGCACCTATGGTAAAAAAATCTACTTTTCAAGCTGTTTGGACAGATCTGTGTGTTGGTATAGTGTATAGACCGTCATACTGGGGTGATATGAACACACCCAGTCCTTTTTTTTCAATTTAACTACAAAAAAAGGGTCGGCCAATTGGAGCTGTTTTCAAATCGATCGCACCATTATGTAGGTGTGCGATCCCCCCGCCCACCGAATTGATTGACAGCTGCGCTCATTAACATGTTCCGGTAGTCACGTGTATATGTCAACAAGACCAGGCAGACATACGCAAAGCAACCGGGAATAAAAGCTCTGTTCTGTTCGCTAGGATCAGCAATCATCATCAAATGTGATTAAGAGTGAGTTTCACACGTTTAAAGTGTTTTAAAACAGAGTATGTGTGTAATTAATTACAGCGATTTACTTCAGCTTTACTTC
Associated Phenotype:
This allele has been associated with this phenotype by genetic linkage analysis and may not be causal.
See FAQs for more info.
See FAQs for more info.
| Stage | Entity | Quality | Tag |
|---|---|---|---|
| Pharyngula:Prim-5 ZFS:0000029 |
brain ZFA:0000008 |
necrotic PATO:0000647 |
abnormal PATO:0000460 |