ZMP
ythdc1
Ensembl ID:
ZFIN ID:
Description:
YTH domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001007411]
Human Orthologue:
YTHDC1
Human Description:
YTH domain containing 1 [Source:HGNC Symbol;Acc:30626]
Mouse Orthologue:
Ythdc1
Mouse Description:
YTH domain containing 1 Gene [Source:MGI Symbol;Acc:MGI:2443713]
Alleles
There are 6 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa13549 | Nonsense | Available for shipment | Available now |
| sa14642 | Essential Splice Site | Available for shipment | Available now |
| sa20594 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa13549
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000073671 | Nonsense | 98 | 679 | 3 | 16 |
The following transcripts of ENSDARG00000051953 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 5 (position 72910584)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 69108180 |
| GRCz11 | 5 | 69880732 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGTAAAAAGACCAGCAATCCCAGAGGAAGACACGCACCAGAAGAKCTATA[T/A]GATGACAGAAAGAACCATTCTGGAAGAGGAGGTGCGTCTCGGGCTGATCT
Long Flanking Sequence:
GTCAGTCTTGGTACACAATTTAACTACAGAAGAGTCGAGCTTTACATAAGAAAATTATCTGAACTGTTTTTTTTTTTTTTTTGAGTGAGTGAGATGCTAATGGTCTAATCCGATTCAATGATCTATGCTAAGCTAAGCTAAAAGTGCACCAGCCGGCGATCATCTGAATGCATTGAAAACTCATAACAAACAGCTGTTTAACTCTGCGACTTATAACATGAGCTTATTTCCAGATTAGTTGAGTGTCCCTTTAAAGAATTTTTCTGTGTCTAGTAAAAATCCATTTTCTGGAGAAAAGTGTTTCCACATTAACCGGTTGTTTACTTTAACGTCTCAGGGTCTAAAAGGAAGCACGATCGAGGGGATGCTCAGGATGCGAAGCGCCTGCGAGCTTCAGGACACAACACCAGACAACCAATGAAAAGAGCTGCTCCTTCTTCTGGGTCAAACGGTAAAAAGACCAGCAATCCCAGAGGAAGACACGCACCAGAAGATCTATA[T/A]GATGACAGAAAGAACCATTCTGGAAGAGGAGGTGCGTCTCGGGCTGATCTGTCGAAAGGATATGGTGAAAAAGGCCTGTCCAGCAGCAGAGACTCACAGAGACGGATCAAACCATTGATGCCTGAGCTGACAGAGGTAAGACAATAGATATTGTGCACCCATACATTCTCTACTTGTTTCAGAATTGTTTGAGTTTCTTTTTTCTGTGATGGGAGGCAGCAACAATAGACTTTCATAGAGTTTTTGTTCCTACTGTTGATTGTCAATGGCTTTCACTTTCCAACATTCTTCAAAATATCATCTTTTGTGTTCAATAGAAAAAGTAAGCTAATTAAGATTGGAAACACTTTAGGGTTTAATGGTTTACTCACGATTGAGTTAACAACCAGTGAGTAAATGTTCATTTTTGGGTGAACTACCCCTTTAACTATTCCCATAGGGCAGATATGTCAAACTCAATTCCTGGAGGGCCGCAGCCCTGCACAGTTTAGTTCCAACCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa14642
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000073671 | Essential Splice Site | 606 | 679 | None | 16 |
The following transcripts of ENSDARG00000051953 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 5 (position 72930848)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 69128444 |
| GRCz11 | 5 | 69900996 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGCCCGCTTCAGGGAAAAGAGGGTYGTCCGCTCTTTCGCCTCCAGTTTGG[T/C]AATGATTTGCCTCTTAAARCACACTCAGATACTGCCTGCAAGGCATCAGA
Long Flanking Sequence:
CACCACCTTGGCAAGGAATGGTAAGATTGAATTATATTGAATAAAACTAAATTTGATGTGTATTTTGGTTCAGTTTTGATTATGATTTGGGTTTACGTTGTACAAATAAAAAAGAAATCCCTCTTGCAACACTTAAATACCATTTAAAAATACCATACATGAGTTATTTTCAAGCCTGTGTATTGTCATTTCAGTCTTTTGGTATTAATAAATAATAATGATTGATCAATTTTGGCCTTTTCACTTCAGTCTCCATCAAGCTGACTGTAAAAATATTGGTTGTGGTTTATACAATATCTTGCAGCTCTTATAGTAACACTCTAATATGTTTGATGTGAAGGCCCCATACCCTGGTATGGAGCATCCTCCTCAGCACCCGTATTACCAGCACCACCCTCCTCCACCCCAGGCCCACCCGCCTTACTCTGGACACCACCCCATGCCCCATGATGCCCGCTTCAGGGAAAAGAGGGTTGTCCGCTCTTTCGCCTCCAGTTTGG[T/C]AATGATTTGCCTCTTAAAGCACACTCAGATACTGCCTGCAAGGCATCAGATACGACTGATATTATTGCATGTTTGCTGATGAAGCTGCAAACTGTGTAGCTGCCTCTGATATGCTTGATGATGCTTTACATTTACTGTAGCATTATCTTGCTGTTCATTTAAATTAATGTGTTTTATTTATAAATACACAAGTCAAAAGTAATGACGTCAATAAAAAGTGTATAACTACATCTACTATGAATTGTTGTACCTTCTGACTGCTACATATTATAGTTTTTATATTAATGTATATGTTAGAGTTAAAAATATTAATATTGTTATGAATTATATATTTTATGTTCAGTATTTTTGGATTTATATAATTATTTATTAATAAGAGAACACTTTGTACTTATTACCTGGCGATTTATTATAATGTTTTAAAAATTGAAGTGCAATATGTCAGCATTGTCAATTTTGTAAAATGTTTGTGAATTATTAATTGTTATTTATGTGAATTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa20594
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000073671 | Nonsense | 650 | 679 | 16 | 16 |
The following transcripts of ENSDARG00000051953 do not overlap with this mutation:
Genomic Location (Zv9):
Chromosome 5 (position 72932753)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 69130349 |
| GRCz11 | 5 | 69902901 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAGAGACCGTCAGAGAGAGCGTGACCGACCCAGAGACGGACGGAGAGAC[C/T]GAGAGCGAGAACGTGGACGGGAGCGGGACCGCGAGAGAGAGAGAATTCGA
Long Flanking Sequence:
TCTATTGGATTGAGATCTGGCGACTGTGCAGGCCATTAGTACAGTGAACTCATTATCATGTTCAAGAAGCCAGTCTGAGATGATTCACGCTTTGACATGGCGGGTTATCCTGCCGGAAGTAGCTGTCAGAAGATGGAGATACTGTGCTTATAAAGGGATGGAAGGATGGATGTAGGCTTGACCACGTCTACATGCCTAAATGCATTGAGTTGCTGCCATGTGATTGGCTGGTTAGAAATGTGTGTTAACAGAGTTCGACAGGTGTATCTAATAAAGTGGCCGGTGAATGTCTTTCACTCATTTAGGTTCTACTGAATGATGTGTTTGGTGATGTTCATCATGCTCATTCTTTTGCATTTATTTTTTTCTAGCATGATTACGACATGCGCGTGGATGATTTTCTAAGGCGAACGCAGGCAGTGGTGAGCGGACGCAGAAGCAGACCGCGGGAGAGAGACCGTCAGAGAGAGCGTGACCGACCCAGAGACGGACGGAGAGAC[C/T]GAGAGCGAGAACGTGGACGGGAGCGGGACCGCGAGAGAGAGAGAATTCGAGACCGCGAGAGAGAAAAGGAGAGAGGCCGATACCGGAGATAGGGGGGAAACACTTCACTTTTATTCCCTTTTTTATTAATCACTTTGTAGATAGTGTTTATTTCATTTATCTGTTTTTTTTATATATATATATAAATAGTTAAAGGGATAGTTCACCCATAAAAACTCTGTTTACTTGTTTCAAACCTCAAACTTTCTTCTGTGGAAGATATTTTGAAGAATGCTGGAAACCGGTAACCATTGACTTCTATTGTAGGAAAAGCACATACCATGGAAGTCAATAGTTACAGATTTTCAGCTTAAATGTCATTTTTTGTGTGTTTTACAGACGTCAAAGTGCAAATAAATGCTTCTACTTAGATTTTTAGTCGTTTCTAATCCAAATATCTACAAAATAAATGAATAAACATTTTCTAAACAAGCTAAAAATTGTCGTTTTATGAAATAATA
Associated Phenotype:
Not determined