Busch Lab

ZMP

ptcd3

Ensembl ID:
ENSDARG00000057494
ZFIN ID:
ZDB-GENE-030131-6849
Description:
Pentatricopeptide repeat-containing protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q32LU7
Human Orthologue:
PTCD3
Human Description:
Pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:24717]
Mouse Orthologue:
Ptcd3
Mouse Description:
pentatricopeptide repeat domain 3 Gene [Source:MGI Symbol;Acc:MGI:1917206]

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa42381 Nonsense Mutation detected in F1 DNA Not yet available
sa22457 Essential Splice Site Available for shipment Available now
sa14622 Nonsense Available for shipment Available now
sa17910 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa42381
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080138 Nonsense 44 667 2 24

The following transcripts of ENSDARG00000057494 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 20080403)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15845138
GRCz11 14 16150701
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGTTTATTTATAGAAGTTTTGCAGCGTATCAACAACCTGATGTTTCTTCA[C/T]AAGGTTAGACGATTAGTTTCGGTCTCTTTGAAATAAAAGTTACAGCAATG
Long Flanking Sequence:
TCACAACCGGATGCTTGGTCATCGCATTTTGAGCGTCTAGGTGCCCTCTGCAGGACGATTTCATTTTGAGCGTCTAGGTGCCCTCTGCAGGACGATTTCGGTTGTACTATAGAAATAATTAAAAGCACTGTGAACGTGCAACGAAATTATTTTTAGGCACACGATTGGGTGTCATGGCGTCCTCCTGTTCGCAAGCTCTCAGGCATCATGCCTGTAAGAGTAGCAAAATATTGCGCATCCATCTGCAGAAGTCATGGACTAATAGGTAAGATAAATGTAAAAATATATATATATCAGGGCCTTTTTGGTCATTAATTTTTTTCTTGTAATCTCTACGTTTTTATAAAAATGACTGTTTGTCTCTAGGTCATTTCAAGGGGCTGTATCTGTCATATCGTATCTGCGAATTATTATCATCTTATCCGCTTTTATTAAACATGGTATTTATGTTGTTTATTTATAGAAGTTTTGCAGCGTATCAACAACCTGATGTTTCTTCA[C/T]AAGGTTAGACGATTAGTTTCGGTCTCTTTGAAATAAAAGTTACAGCAATGTGTTTTCAGAAATATCTATCTTTTAATCAAGTGTGTTTGTTTGTTTGTTTGTTTGTTTTAGAGGAAATAGTCATTCCAAAGAAAAAAACATGGTATGTAATATTCAGAAATGACCACACTAATGAAACCACTAATCAATTCACCTCAACTGATTTCTATTTTTAAGTTTGTAATAATGAGTAGTAATAATGAGTAATGAGTAATTACCTTCTTTATCAGGAGCAAAGAGGCTGTCTTGCAGGCACTGGCTTCCACTGTGAAAAGGGTATGTTAATCTGGTAATGCTAATATTCATTTTAAAAGCACAATGTCATGTAATGTCAATCGAATATTGTTATTGTGTGTCTGTGTGTTCAAGGATCCAACTGCATCAGATTACAGACTCCAGGATGATTCATTTCTCACTCCAAAAACAGCATCAGATTTTGTAAGTAACTTTATAATCGAACT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22457
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080138 Essential Splice Site 282 667 11 24

The following transcripts of ENSDARG00000057494 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 20071686)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15836421
GRCz11 14 16141984
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CACCCAAGCATTTAGCACCTACACTGACCTGCTCAACAACCGACTTAAAG[G/T]TGAATATGCAAATACATTTACAGTTTATAAGATTTTATGGATCAGTAAAA
Long Flanking Sequence:
TTCAGGAAACGGTAATATATTCAGATGCTTCATGGTTTTAACAATATTAACAAGAACTGTTTTGAACATTTATACTTAGTTTTTTAAAAATGATAAAGATGTGTATTTATAATATTAAAATCGAAACCTTATTTTAAACAGTAATGTTTTGAATTTGACATCTTCTAACACTTTTGATGCCTATAATGTGTTTTCATCAGTTGAATGTGATCATGTTGAGCATTAAAAAAAATCTGTTATTTATTTTTTTTTTTTCAGAGAGAATAATAACGCTGAGAGAATTTTTGGGCTACTGTCAGAGCCGAACACGCGTTCATACAGCGCTCTTATCCGAGGCATGGTGAAGGTAACACACAAGTGAATTTCTGCTTGTTAAGTTTAATAGGTTTAGTTTAAATCCAGAATGGGACTAAAAGTGGGACTGTGTTTGATTTCTTAGCATGCTGCTTACACCCAAGCATTTAGCACCTACACTGACCTGCTCAACAACCGACTTAAAG[G/T]TGAATATGCAAATACATTTACAGTTTATAAGATTTTATGGATCAGTAAAAAGTAACAAACACACACACTTGTTTGCCCTTCTTCTGCTTCTTCTTCTTCAATAGCTGATGTCCACATCTTCAATGCCCTGCTCGCAGCCGTCCCTGCAGTCCGGCCAAAGTACAATGAAAAATGGGAACTGATACTGGTATGCAAGTTAGATTTAGTTATGAGGTCGCTTACTTAAAGGGTTACTTTATCCAAAAATGAAATATTAATTTCCTCATCCTCATGTTGTTCCAATTTTCTAACACCTTTATTGATCCTCAGAACATAAATTACGATAATTTTTTTATAAAATACAAAAGCTTCCTCATTCTCCTCAGACACCAATAGACCCCTTTTACAATGATCTCATTTCATTTATCCGCCTCTCCGCAACAAATACAGCTGCAGTCACAGACTAACCGTGTCTGTAGTAAATATACAGCTGACTGGTTGAGTTCTCAATGGGAAGTTCT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa14622
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080138 Nonsense 544 667 21 24

The following transcripts of ENSDARG00000057494 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 20059848)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15824583
GRCz11 14 16130146
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTAATGCACATTTGTGTTTCTGTCCAGGTSCAGGAGTCATTTGCTGATTG[T/A]GCGCTGGACATAATGAAAATGTATGACACAAATGAGAGAGGCAAGGTCAT
Long Flanking Sequence:
GGTGTGTGTGTGTGTGAACTTTGTAAATGCATTGTGTGCGAGTCAGTGTCATCAACTCTTTAACTCCACATCAAATACATCAAATAATCATTGGTAAAGTTCTTACTGTAGTATTTCTCACAAACGTTACGTGAGATCTGCTTCCTTCATGTCTGTCACTGTGCTGTTCATCTGATGCCGGAGACTTGAGGCACACTCTGACAAGCACGTAGGAACAGTGGGCGGGGAGAACTAGCATTAAAACCACAGGCAACAAAAACCGTTACAGAACATTCTAATATTCTGAAAGCTATAATAAATAATCTGATGGGTGTTTTGAGCTGAAACTTTACAGACAAATTCTGGAGACACAAAAGACTTCTCTTAAATCTTGAAAAGGGGGTAAAATAGGTGAAAGTAATTGATGACTCTTTATATAAATTGTCTTATTTTCACACTTTGTATGCATCTCTAATGCACATTTGTGTTTCTGTCCAGGTGCAGGAGTCATTTGCTGATTG[T/A]GCGCTGGACATAATGAAAATGTATGACACAAATGAGAGAGGCAAGGTCATAATGAGCTGGACGGCCAGTTCTCTCAGTGACGTCACCACTATTCTACTAGCCGCTAACAGGAGACAAGAAGCCTGGTAAGCTCCTATATGGACAGCTGTAATGTCATCAAGATCTACAGTAATTGAGTTCAGCGCATCACTCATGAGGTTTTCTTCTTTAGGGAAATGCTGAAACTCTTCAGAACCCACAACAGAGTTCCCAGGTAAGAGAACAGGATCACAGTATTTTGAGCTGGGATTTTTGATAGCATTTCTTGGCTTGTTACAGTTTTGTATGGCCTCGCACACGTAATGCACAATTATGTAGTGCGTTAACTTTAAATTAGCTCAAAATGGAATATAAAAGAATTTACAGCGGCTTCAAAAGAATCAACTCTTTTGAACTGAACAAATGAATCATCCAACACTTGTTTAAACAGACAGTACTGTTGACTCTAAAATAAATGTATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17910
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080138 Nonsense 586 667 21 24

The following transcripts of ENSDARG00000057494 do not overlap with this mutation:

Genomic Location (Zv9):
Chromosome 14 (position 20059723)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 15824458
GRCz11 14 16130021
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAGTGACGTCACCACTATTCTACTAGCCGCTAACAGGAGACAAGAAGCCT[G/A]GTAAGCTCCTATATGGACAGCTGTAATKTCATCAAGATCTACAGTAATTG
Long Flanking Sequence:
GTTACGTGAGATCTGCTTCCTTCATGTCTGTCACTGTGCTGTTCATCTGATGCCGGAGACTTGAGGCACACTCTGACAAGCACGTAGGAACAGTGGGCGGGGAGAACTAGCATTAAAACCACAGGCAACAAAAACCGTTACAGAACATTCTAATATTCTGAAAGCTATAATAAATAATCTGATGGGTGTTTTGAGCTGAAACTTTACAGACAAATTCTGGAGACACAAAAGACTTCTCTTAAATCTTGAAAAGGGGGTAAAATAGGTGAAAGTAATTGATGACTCTTTATATAAATTGTCTTATTTTCACACTTTGTATGCATCTCTAATGCACATTTGTGTTTCTGTCCAGGTGCAGGAGTCATTTGCTGATTGTGCGCTGGACATAATGAAAATGTATGACACAAATGAGAGAGGCAAGGTCATAATGAGCTGGACGGCCAGTTCTCTCAGTGACGTCACCACTATTCTACTAGCCGCTAACAGGAGACAAGAAGCCT[G/A]GTAAGCTCCTATATGGACAGCTGTAATGTCATCAAGATCTACAGTAATTGAGTTCAGCGCATCACTCATGAGGTTTTCTTCTTTAGGGAAATGCTGAAACTCTTCAGAACCCACAACAGAGTTCCCAGGTAAGAGAACAGGATCACAGTATTTTGAGCTGGGATTTTTGATAGCATTTCTTGGCTTGTTACAGTTTTGTATGGCCTCGCACACGTAATGCACAATTATGTAGTGCGTTAACTTTAAATTAGCTCAAAATGGAATATAAAAGAATTTACAGCGGCTTCAAAAGAATCAACTCTTTTGAACTGAACAAATGAATCATCCAACACTTGTTTAAACAGACAGTACTGTTGACTCTAAAATAAATGTATTGCTATTTGAAATAAAGAAAAAAAAAACACTAAAGAAACAAAAGAATTTTATGAAGTAGTCAGAACTGCTCTCGCAAAATGGAAAAAGAATTAGAATCGTAATACGTTGTTTTAGGGTTTAAGGTT
Associated Phenotype:
Not determined