ZMP
vcana
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to vertebrate chondroitin sulfate proteoglycan 2 (Versican) (CSPG2) [Source:Un
Human Orthologue:
VCAN
Human Description:
versican [Source:HGNC Symbol;Acc:2464]
Mouse Orthologue:
Vcan
Mouse Description:
versican Gene [Source:MGI Symbol;Acc:MGI:102889]
Alleles
There are 14 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa1460 | Nonsense | Available for shipment | Available now |
| sa15805 | Essential Splice Site | Available for shipment | Available now |
| sa17331 | Essential Splice Site | Available for shipment | Available now |
| sa17829 | Essential Splice Site | Available for shipment | Available now |
| sa15511 | Nonsense | Available for shipment | Available now |
| sa17232 | Nonsense | Available for shipment | Available now |
| sa20520 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa1460
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Nonsense | 230 | 2896 | 4 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48039943)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45828683 |
| GRCz11 | 5 | 46428836 |
KASP Assay ID:
554-1385.1 (used for ordering genotyping assays)
KASP Sequence:
CTGGCTGTTTTGGAAACCTGCCTGGAAAACCTGGTGTTAGGTCGTATGGC[A/T]AACGGAAACCCACAGAAACTTATGATGTGTTCTGTTATGTGGATAAACTT
Long Flanking Sequence:
GAATGCCCCCATTTTAAACTCTGTTCTCTGTTTGAACACGTTAATTTTTATTTGTTTTTTTTGTGTTTTTTGAACAGGCGTGGTGTTTCACTACAGGTCGAAGGTCAGCAGATATATTCTGAACTATGCACAAGCTGTGCAGGCCTGCAGCGATGTTGGAGCGACCATTGCTACATCAGAACAGCTGAGAGCTGCTTATGAAGATGGATTTGACCAGTGTGATGCTGGCTGGATAGCAGATCAAACAGTGAGGTTAGAGGCTGTACTTCTATATGGTCTTCTGGGAGCAGTCTCATTCATAAATTCAACATCTATACATATTCTTGTATAAAGGCCAGTTTCAAAAGCAAAACACATTATAATGTCACCTTATTTATTAGTGATGAACATTCCTGTTTCTGTCTGTGTGGCTTGTTTCTATCTGCAGATACCCAATCACGAGACCCAGGCCTGGCTGTTTTGGAAACCTGCCTGGAAAACCTGGTGTTAGGTCGTATGGC[A/T]AACGGAAACCCACAGAAACTTATGATGTGTTCTGTTATGTGGATAAACTTGAGGGTATTTTTTTTTCTTACCAATCATTTATATGACTATTTTAGATAAACCCCTTGTTGACAAGGCCAACAGTTCTGCGGTAATTCGACAGAGCAGTAGTTTATCTATTATATTTGCTTTATGCTGACATATTTAATGTGGTTTCAAACTGCGGTTATGACCAAAAATGAATATCAACCATTTTGGCGATGCACATCTGTGGTATTACGCGCTGAAGTGGAAGCTTTCAATATTTTTGTTGCCACAGAAAAGGAGTTTAAGCTCTTTTTTAATAGTTTTATTTGAATTCCAAAGTTTAATCTGACCTTTAAAAACTTGTTTTGCTGTGTATCAGTATGTTCATATTTTGTTTTTAATCACATGCATATTTCAAGCTGTTATTGGTTACTAATAATGAAGAAAAATAGGTTGTAGTGATTTTTTTTCAATTTACAAAATGAATAATTTAC
Associated Phenotype:
Normal
| Stage | Entity | Quality | Tag |
|---|---|---|---|
| Larval:Day 5 ZFS:0000037 |
whole organism ZFA:0001094 |
quality PATO:0000001 |
normal PATO:0000461 |
Mutation Details
Allele Name:
sa15805
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Essential Splice Site | 640 | 2896 | 15 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48062030)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45850770 |
| GRCz11 | 5 | 46450923 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAMAAGCCAAGATACTGCATTAACAGAAAGAAMAGTCACAAATCAAARTA[G/A]TACACCTTTCACAGRAACAACTGCAGCAAMTRTTATGAAGGATGAAGAAK
Long Flanking Sequence:
CTCCTTACTGCACACCGCAAGCAGATCAGATGAAGATCATACCAAACCTACAGAAACAATAACAGTATCCAGCTCAACAGATGCTGCTGTCACAAGCACAAAATCATCAGAGAAGACAACAGCCAGGGATTTGTTTTCAACTTCAAGACTAGCATTAATTTTGTCATCTTCAGAGTCTGAGAGTTCAGGAGATGGAACAGTAGATGTCACAAGCTCAGAGTTCACAACTAGCAGGTCTTCACTGTACACTACTCCAAAGCCATACACAGACCTTAGAAAAACAACATTTCATACAACAGAAGCAGTATCAGTGTCCAGCTCAACACATGTTGAAGATCAGAAAACTGAGACAGACAGCACTGGACCTGCTTTATCTTTTATGTCTACTGCATCTATTACAAAACATTCATTTACATCATTGAGCACTGGGGAATCAACAGGACAGACCATTACAAGCCAAGATACTGCATTAACAGAAAGAACAGTCACAAATCAAAGTA[G/A]TACACCTTTCACAGGAACAACTGCAGCAACTGTTATGAAGGATGAAGAAGTGTCAACAAAACCTTCTGAATCCACAATCATTGATGACTTAGAGACGCAGTTCTCCTCTACTCAAACTGGAGATTTAGATAATATTTCATCTGAAAGCACTGTTACAAGCAAAATGACCCCAGACAAGACAACTCCCAAAGATGGTCTTTCATGTAGTCTTTCTTCAAGCTTTCCATCAACTGTGTCTGAAGATTCAGTAGATGAGACCTCAGAGAAGACAATTGCCAAAGATTTATTGTCGCCAATCTCTTTACTGCACACCACAAGCAGATCAGACAAAGATCTTACCACACCTACAGAAACAATCTCAGTGTCCAGCTCAACAGATGCTGCTGTCACAAGCACAAAATCATCAGAGAAGACAACAGCCAGAGATTTTTTTGCAACTTCAACAATAGCATCAATTTTGTCATCTTCAGAGTCTGAGAGTTCAGGAGATGGAACAGTGG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17331
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Essential Splice Site | 946 | 2896 | 18 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48063813)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45852553 |
| GRCz11 | 5 | 46452706 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACAGATGCTGCTGTCAMAAGCACACAATCATCAGAGAAGACAACAGCCAG[A/T]GATTTTTTTKCAACTTCAACAATAGCAWCAATTTTGTCTTTTTCAGAGTC
Long Flanking Sequence:
GAGTACTCAACAGCACAGACAGTTGCAAGCCAAGATACTGCATCAATGGTAAGGACAGTCACAAATCAAGGTAGTACACCTTTCACAACAATAACTGCAGCAAATGTGATAAAGGATGAAGAGGTGTCAACAAAGCCTTCTAAATTCACAATCACTGATGTTTCAGAGACACAGTTCCCCTCTACTCAAACTGGGCATTTATATGAAAAAATATCTGAAAGCACTTTCACAAGCGCAATGACCTCAGACAAGACAACTCCTAAAGATGTTCTTTCATCTTTAAGTCTTTCTTCAAGCTTTCCATCAACTGAGTCTAAAGCTTCAGTAGATGAAACCTTAGAGAAGACAACTGCCAAAGATTTACTGTCACCAACCTCTTTACTGCACACCACAAGCAGATCAGACAAAGATTTTACCAAACCTACAGAAACAATCTCAGTGTCCAGCTCAACAGATGCTGCTGTCACAAGCACACAATCATCAGAGAAGACAACAGCCAG[A/T]GATTTTTTTTCAACTTCAACAATAGCATCAATTTTGTCTTTTTCAGAGTCTGAGAGTTCAGGAGATGGAACAGTAGATGTCACAGTCTCAGAGTTCACAACAAGCAGGCCTTCACTGTACACTACTCCAAAACCTGACAAAGACCTCACCAAAACAACATTTCATACAACAGAAGCAGTATCAGTGTCCAGCTCAACACATGTTGAAGATCAGAAAACTGAGACAGACAGCACTGGACCTGCTTCATCTTTTATGTCTACTGCATATATTACAAAACATTCATTTACGTCATTGAGCACTGGGGAATCAACAGGACAGACCGTTACAAGCCAAGATACTGCATCAACAGTAAGAACAGTCACAAATCAAGGTAGTACACCTTTCACAGCAACAACTGCAGCAACTGTTATAAGGGATGAAGAAGTGTCAACAAAACCTTCTGAATCCACAATCATTGATGACTCAGAGACACAGTTCTCTACTCAAACTGGACATTTGGA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17829
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Essential Splice Site | 1821 | 2896 | 30 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48072456)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45861196 |
| GRCz11 | 5 | 46461349 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATTTTGTTGAAGGACAMAGAGCTGTYAGCAAACCCAWCTGTATTAATCAG[T/C]ACTGATGTTTCAGAGACAATGTCCAGCTCAACAGATCMTGATGTCACAAG
Long Flanking Sequence:
CAAACTGGACATTTAAATGAAATTTCATCTGAAAGTACTGTCACAAGCACAGTGCCCTCAGACAAGACAGCTCCCAAAGATGTTCTTTCACCATCAAGTCTTTATTCAAGCTTTCCATCAACTGAGTCTGAAGCTTCAGGAGATAATACCTCTGAAATATTTATCAAAGAGTTCACAACAAGTTCTCCACTTTATACTGCTACTATATCAGATCAAGAACTTACAAGAACACCATCTGACAAAGAAGAAAGGATTTCATTTTCAAGCTCAACACATGGTGAAACTGAAACCGAACAGACAATTGAGGCACAGAGTAGAGAACCTGTTTCCATGCTTGATTTTACTGAAACAAGTACCGTGCATACATTTACATCATCAAACACTGAGTATTTAACAGAATACACAATGTCAAGTCAGGATATAAAATCACATACAACTACAACTACAGCCATTTTGTTGAAGGACAAAGAGCTGTCAGCAAACCCATCTGTATTAATCAG[T/C]ACTGATGTTTCAGAGACAATGTCCAGCTCAACAGATCCTGATGTCACAAGCACAACATCACCAGAGAAGACAACAGTCAGAGATTTTTCTTCAACTTCAAGAATAGCATTTATGATTTTGTCATCTTCAGAGTCTAAGAGTTCAGGAGATGAAACAGTAGATGTCACAAGCTCAGAGTTTAAAACCACAAGTTTAAAACCACCACATCCTTCATCTCACACTACTTCAAAACCAGAGCAAGACCTTAGCAAAGCAACATTTACTACAACAGAAGCAGTATCAGTGACCATCTCAACACATGCTAAAAATCAGAGTACGGAGACAGAGAGCATTAAAGCTGCTTCCTCTATTGTTTCCACCGCATTCAGCACATTAAATACATTTACATCATTGACAGCTGGTGAATCAACAGAACAGACAGTTTCAAGTCAAGATAATAAATCAGCAGCACAGACAGGTTCAATTCAAGATAGTACACCTTTCACCGCAACAACCCCAGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa15511
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Nonsense | 1940 | 2896 | 33 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48074365)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45863105 |
| GRCz11 | 5 | 46463258 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TCACAATGATCTCAGAGAAAACARCTCTGTCATCRTCATATTTTYCTTCT[A/T]GATTGCCATCAACAGAATCCSACTTTTCTGGGGATTACAGCTCTGAAATG
Long Flanking Sequence:
TCACAAGCTCAGAGTTAACAACTAGTAGGTCTTCACTATACACCACTCCAAAACCAGAACAAGCCCTTAGCAAAGCAACATTTCAAACACCAGAACCAATTTCAGTGACCAGCTCAACACATGCTGAAGAACAGAGAACTGATAATTCAGGAGATAGCACCTCTGAGAACATCTCACATCACTCAACTAAGGCGCATAGTAGTGAACCGGTTTCTACTCTTGGTTCTACTGTAACTAGCACAGTACATACATTTACATCATTGATCACTGGCGAATCAACAGCACAAACAGTCACAAGTCAAGATATCACATCAGACACAGCAACAACCACAGCAACTGTGATGCAAGACAAAGAGCTGTCAGTAAAACCATCTGAGTCCACCATCAATTATAAGTCAGAGACTGTGTTTACTTCTGATCAGACTAATGACAAAACATCTCAAAGCACTGTCACAATGATCTCAGAGAAAACAACTCTGTCATCATCATATTTTTCTTCT[A/T]GATTGCCATCAACAGAATCCGACTTTTCTGGGGATTACAGCTCTGAAATGCTAAGCAAAGAGTTTACAACAAGTCCTTTGCCATACACTACAACAAAATCCGGCCTAGAATTCAGTAAAACCCCAAACACAATCTTAGTTTCCAGTGATGAAGATAGAATTACGCCAACAGCTAAATCCCATGATCAGTATAATGTAGACACTGATGAGACAGAAGTTCAAGAAAGTGACCACACATTAGAACCAGTGAGGCCTGACAGTTTATCCACAACTGAGTTGTTTTCAGGGAAAGTCCAAAAAGTAATTACAGAATCATCTATTGAACAAGGCAGTGGAGAACTAAGTGAAAGCTCTGGTGAAATATCCTCTTCTGCTGTAGAATCAATTCCTCCCCAAGTTACTCCGTCTGAGGTCAAGACAACTGCTGTTGGATCTAAGTCAATTGCTGATTCTAGAGAGCAGTCATCAGACAATATAACAACTACAATATATGTTAGAACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17232
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Nonsense | 1966 | 2896 | 33 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48074444)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45863184 |
| GRCz11 | 5 | 46463337 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGGGATTACAGCTCTGAAATGCTAAGCAAAGAGTTTACAAMAAGTCCTT[T/A]GCCRTACACTAYAACAAAATCMGGCCTAGAATTCAGTAAAACCCCAAACA
Long Flanking Sequence:
ATTTCAAACACCAGAACCAATTTCAGTGACCAGCTCAACACATGCTGAAGAACAGAGAACTGATAATTCAGGAGATAGCACCTCTGAGAACATCTCACATCACTCAACTAAGGCGCATAGTAGTGAACCGGTTTCTACTCTTGGTTCTACTGTAACTAGCACAGTACATACATTTACATCATTGATCACTGGCGAATCAACAGCACAAACAGTCACAAGTCAAGATATCACATCAGACACAGCAACAACCACAGCAACTGTGATGCAAGACAAAGAGCTGTCAGTAAAACCATCTGAGTCCACCATCAATTATAAGTCAGAGACTGTGTTTACTTCTGATCAGACTAATGACAAAACATCTCAAAGCACTGTCACAATGATCTCAGAGAAAACAACTCTGTCATCATCATATTTTTCTTCTAGATTGCCATCAACAGAATCCGACTTTTCTGGGGATTACAGCTCTGAAATGCTAAGCAAAGAGTTTACAACAAGTCCTT[T/A]GCCATACACTACAACAAAATCCGGCCTAGAATTCAGTAAAACCCCAAACACAATCTTAGTTTCCAGTGATGAAGATAGAATTACGCCAACAGCTAAATCCCATGATCAGTATAATGTAGACACTGATGAGACAGAAGTTCAAGAAAGTGACCACACATTAGAACCAGTGAGGCCTGACAGTTTATCCACAACTGAGTTGTTTTCAGGGAAAGTCCAAAAAGTAATTACAGAATCATCTATTGAACAAGGCAGTGGAGAACTAAGTGAAAGCTCTGGTGAAATATCCTCTTCTGCTGTAGAATCAATTCCTCCCCAAGTTACTCCGTCTGAGGTCAAGACAACTGCTGTTGGATCTAAGTCAATTGCTGATTCTAGAGAGCAGTCATCAGACAATATAACAACTACAATATATGTTAGAACAACTGTAAATGGATATGCAGAATTAAGCTCAGTTACTTTTGAAGAGGTAGAAAGCTCTGATCATCAGACAACAGAAATGT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa20520
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000099132 | Nonsense | 2115 | 2896 | 36 | 49 |
| ENSDART00000144973 | None | None | 157 | None | 3 |
Genomic Location (Zv9):
Chromosome 5 (position 48076010)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 45864750 |
| GRCz11 | 5 | 46464903 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTTACCAGACGATTCTACAGGTTATGTATTCAGAACACCAACAACTAAGT[C/A]ATATGATGATCTAACTGTAAGAACAGATGAGGCAGAAGTGGATGAAACTG
Long Flanking Sequence:
GTCTGGTGAGGAGGAAAGTGTGAGCACAACAGCTGAACTATATGATAATTATACTGTGGCCACAGATGAGGCAGAAATTAGTGACAATGTTTACACCTCAAAGCCAGTAAGTATTGAGAGTTTCTCCCATTCTGTGTCTTCCACAACTGAATCAACGTTACTGTCTAGCACAGTACAAACAGTAATCTCGGCTACTGAAGTTACAGCTGAAAGTGAATTGGAAGATGACAGCTCTGGTAGTGAATTTTCACCAGAAGCTCTTGAAACAGTTCCTGGAGATATGTCATCTATTGGCAAAACACAGGGAACTGAAGATGCATTACTTGATAAAGTAGTATCAAGTACATCTGAGACTTTATCAGTTTCAGGCACACAAAATAGTACCTTACAGACAAGAACTATAAATACAGACCTAAGTAGTCAAACCAAAGAAGATGGCAAGGAATTAACGTTACCAGACGATTCTACAGGTTATGTATTCAGAACACCAACAACTAAGT[C/A]ATATGATGATCTAACTGTAAGAACAGATGAGGCAGAAGTGGATGAAACTGAGAAGACAAGTTTCTCAAGTGCTGCATCTGTCATTGGCAGTACAGATGTCGTACATCAGTCAACTTCATCCCCATCCCCCTCAGTCCTGATCTCCACGCAGCCAGCTGTAACATTTACGATTTCAAATTTGGAGGATGATAGTGGGGACGACTCAACAGAGACAGATGGAGCAGAAGATGGATCAGGTGATGATACAACTTATGTGACATCATCACCTTTGCTCTCAAGCTCAGAGATGACAGAAGCATCCATTAGCATAACACCAGTTAGCTCAGTCAGCAGTGGAGAAGATATTACAGCCACAGTAGTTTTACACAGCACCATAACACCTGAAATGCAAACTGTGTCCTCGAGCACAGATGCAGAAAGTTACTCTCTGTTCTCAGAGACCGAGCAGGAACCAACTGGTGGTTCTGTTTTAGACTCAACAGCCACTAGCTTTACTGTTC
Associated Phenotype:
Not determined