ZMP

COL13A1

Ensembl ID:

ENSDARG00000091398

Description:

collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]

Human Orthologue:

COL13A1

Human Description:

collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:2190]

Mouse Orthologue:

Col13a1

Mouse Description:

collagen, type XIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1277201]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa35417	Nonsense	Mutation detected in F1 DNA	Not yet available
sa14592	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa35417

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000040379	Nonsense	216	620	18	42

Genomic Location (Zv9):

Chromosome 13 (position 7397100)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	7701710
GRCz11	13	8033912

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AAGGCTTTATTTTCTCGGTTTCTCTTCAGGGAATTAAAGGAGATGAAGGA[C/T]AGAAGGTAAGGAACACATTTGATTATTATTTTGTTGTTGTTGTTGTTGTT

Long Flanking Sequence:

CTGGCCTCTCGTGACAACACAGAAAAGAGACATCTTTACATTCATCTGTAAGGGAGGCAAGGGGCCAAGTCAATGGCTTTACAATTAAAAGGTTCAAATCAGAGCAGACATGTTATTGGGCACATTACCAAGACGGTTAATCAACAGCTGACTTCGCCTTCCTCCCTTGAGACTTTATTTCTGAAAAATTACTGCCTGTCGCCTTCATGGACGTTAGCTATTTACTCAGCTCTGCCAAAACCATACAGGACTGATTAGCACACAACAGAACTGTTTGCTCATATAATTCCTGAAAATTGAATGGGTTGTTTAGATTAATGATGTTGTGGTGACTTTAACGGCATTCCGTTGCTGCAATAGATGTAAATAAGATGCTAATTTGTCTATTTGGACTGAATCAACATTACATTTTGACTTGTGAAGCTGTTGTTTTAAATTGCAAGCATATTGAAGGCTTTATTTTCTCGGTTTCTCTTCAGGGAATTAAAGGAGATGAAGGA[C/T]AGAAGGTAAGGAACACATTTGATTATTATTTTGTTGTTGTTGTTGTTGTTGTTTAAAAAATGCAATAATGATGCATTATATTTTTCAGTGATTGGTTTAACGAGTAATCTGAAAGTAACCGTTTTGTAGGTTGATAAAGTGTTTTATTGTCTTGGTTCTAGCAAAAAGATTGATCTTGACCAGCTCAACATAGCAACATTGTCCCAACCAATAGAATGTTCCCAGGGTGTGGCTATCCGTTCATTTCACCCAATGACAGATTGCTGTTGTTGTTCTGTGTATGCAAATGTCAGATTTGCGTTCAGTTCAGTTTATCATATTGCTTTAGGGGTTTATTACATCAAACAGGTGTGAGTTTTGTTGCATTACATACAGATACATTTGAAGTCAGAATTATTAGCCCCCCTTTGAATTTTTTTTTCTTTTTTAAATATTTCCCAAGTGATGTTTAACAGAGCAAGGAAATTTCAATCAATCACAGTACGTCTGATAATATTTTT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa14592

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000040379	Nonsense	485	620	35	42

Genomic Location (Zv9):

Chromosome 13 (position 7433520)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	7738130
GRCz11	13	8070332

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

AAGAGRAACTAATTTGYAACTTTTTGTTTCTYATCAGGGMTCTCCAGGTT[T/A]GTCAGGACCAAAGGTTGGTATTCCTGCCCAAGCCCCTTTTATATTCCAGT

Long Flanking Sequence:

GGTGAGTGTGACTGGAGTGCATGTATTAATATGTAGTCCAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGACAGAGAGAGAGATATATATATATATATGTGTGTGTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATAATTTACCTAAGTTGGTCATTAATAGACATTCCCTTTTCTGTTTTTCCTAAGGTCTATGGGCCTGCTGGACCTCCAGGACCTGCTGGGCCAGTTGGGCCAATGGTGAGGGCAATGGCTGCTTCACGTAAAGCTTATATGTATATTATGGTTCAGCCACTTAGAGGATATTTGTTTGTCTAATGGACACCCGTGTGGTCGTTGATGGTGCATTTGTCAAGAGGAACTAATTTGCAACTTTTTGTTTCTCATCAGGGATCTCCAGGTT[T/A]GTCAGGACCAAAGGTTGGTATTCCTGCCCAAGCCCCTTTTATATTCCAGTATTGTCTTTCATATGCTAAACAAGGTTGTGGATCTGATTTATTCTTTCTGGTTTAGGGAGAGCCAGGAATAGGCCTGAAAGGAGAGAAGGGATCATCTGGACAAAAGGGAGATAAAGGAGACAGGGGCCATCTTGGACTTCCTGTAAGTACCTTTTCATTCATATCTTGAATGCTAGCCAATATATCAAATTAGTTGTGGTGAGACGAAAACAATAAGTACATTACTTCTTCCCCATGAAACCAGTGCATAAGTAAATTGAAACATTATCGGAAAAGCATGTTTGTGTAAGCTTTGTGCTTTATATCAGTGTGCTGCTATTTCATGTGTCTTTGTTATTGTCATGGTTCAAAGCTAAGTGTCATCACATTGCATGAATCAGTGGATGTCCACATTTGGCAATCGTATATACAAGTGTCATCATGTAATCATCCTGTCACGCTGTTTTATA

Associated Phenotype:

Not determined