ZMP

col8a1b

Ensembl ID:

ENSDARG00000003533

ZFIN ID:

ZDB-GENE-060503-140

Description:

Novel protein similar to vertebrate collagen, type VIII, alpha 1 (COL8A1) [Source:UniProtKB/TrEMBL;A

Human Orthologue:

COL8A1

Human Description:

collagen, type VIII, alpha 1 [Source:HGNC Symbol;Acc:2215]

Mouse Orthologue:

Col8a1

Mouse Description:

collagen, type VIII, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:88463]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa29815	Nonsense	Mutation detected in F1 DNA	Not yet available
sa14358	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa29815

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000019846	Nonsense	83	731	1	2

Genomic Location (Zv9):

Chromosome 22 (position 29926952)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	22	28700075
GRCz11	22	28650196

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CCTTTGGAAATGAGATGCCTTTGCTTCCACAGTATGGGAAGGAACGTCCA[C/T]AGTTTCCCATGCATATGGGCATACCGATTGCAAGAAAAGGTTGGTAATTT

Long Flanking Sequence:

TAGTAAGTTAAAATGTTTATCTAAAACTCAGTCTTTTACTGATTGTTGATTGCTTAGTTCTGGTAGGGAGACAAACCAATAAACTTATGGGTATCAGCTCTTCAACCAGACATATAACAATGAGCTGTTTCAGTAAAAAAATAAATAAAAAGGGATTTTGCTAACCTTTGATCTGGACCCTGACTACTAACTTTCCTGAATTTTAGAAGCCTACTAATTACAAATGTCTATGCTCTATTCAACAGGACATGGCTGGGCCTCTCCTCTCTGCCTGCTTGTTTGTACTGGTGGAGCATTTGTGCCTGCTACATCATATCCATGCGGGGGCATTTTATGGACACAAACCATTGCCTCAAAAGCGCCAGCCTCTGCCACAGTTACCTCTTCTACCACATGGCAATGAAGGAATAACACAACACCATTACCATGGAAAGGAAATCCCTCAACTTCCCTTTGGAAATGAGATGCCTTTGCTTCCACAGTATGGGAAGGAACGTCCA[C/T]AGTTTCCCATGCATATGGGCATACCGATTGCAAGAAAAGGTTGGTAATTTTGCTAAACACTTTACATTACTTTATATTCACTTAAAGCTTTAATAGAATATTGGTAAATTATTTTCTCAGGGTTGCCTGGATAATTTAAATGAACTGTAAATGCAATGCAATGTTTATTTAAAGAAAGCATTTTAATGGATGAACCACTTAAAAACACCTGTCGTCATATTTAATCAGATTTTTCCATATTTTTTCCATAATATACATCTGGTGAATTATATATGTATTAAAAATATTTCATACTGTTTATATTTTTGACCATGTCATTTTTATCCATTCATTTTAACATCCTATTTGACTGTTTTAAACAATGCTTTCTTGTTTCTATTCTTTCTATTCTTTGTTTTTTTTTTCAGGTGAAACAGTTCCAAGAGGACAGAAAGGTCCTCCTGGAGAGCCCGGTCCGATAGGGCTTCAAGGGCCTCGGGGCCCTCCGGGACTTCCTGGTC

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa14358

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000019846	Nonsense	714	731	2	2

Genomic Location (Zv9):

Chromosome 22 (position 29929215)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	22	28697812
GRCz11	22	28647933

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GGAGACACTGTTCAMGTTCAGTTACCATCAGAGCAAGCAGCAGGACTTTA[T/A]GCTGGTCCTTACRTCCACTCATCATTCTCTGGGTATTTGTTATATCCNNN

Long Flanking Sequence:

ATACCTGGTCCTCCTGGCCCACCTGGGCTACCTGGACCTCGTGCTCAAGCTTCATTTTTTGGGCAAATACTTCCTGAGACAGGTCCTGGGCTTGATGGGGAAAAAGGTGGTTATAAGAAAGAAAAGCCTGGAGGAGCTATTATTGGTAGGCATGGCCTAGAAATGCCTGCATTTACAGCTCAGCTGACAACCCCATTTCCCCAAGTTGGACAACCTGTTGTCTTCAACAAAATTTTGCATAATGGAAACCAAAATTACAACTTGCAAACTGGCATCTTCACATGCAAAATACCTGGAATTTACTACTTTGTCTACCATGTTAATTGCAAAGGAAACAATGTATGGGTGGGTTTATACAGAAACAATGAGCCAGTTATGTATACATATGATGAATACAAGAAAAGTTACCTGGATCAGGCATCAGGGAGTGCTGTACTGCCCTTAAACTTTGGAGACACTGTTCACGTTCAGTTACCATCAGAGCAAGCAGCAGGACTTTA[T/A]GCTGGTCCTTACGTCCACTCATCATTCTCTGGGTATTTGTTATATCCTATGTGAATATGTGAAAAAATGCATAAACAATCACATGTTTTTACATGTTTCTAGTACCACAAAGGCAATGGTTCTTAGTAGAAAATAAGACAATGCTAAATATATGATTACACGTACACATAATTTGAAAACCATTTCACAGTAACTTTAGGTATTTGTTCAACCATATGGTAAGCACTTTGTTATCACATTATTTATTTGCATATGACAGTATAATGATTGTAATTGACATTGACTGCACATCAGTGTAATATGATGTGATATTGCCATAATAAGGAATGTTCACATTGTTGGATATGCACTATTTTTCTGCTGTCTTAGTTTTTCTTTTAACCATCTCAATAAATTTCAGGAAAGTATGTGAGCACATGCAAACAGGTTATCTCATTAACTAACAGCATAAGTAAAATACATATCTAAAAACTTCCTGAAACTTTCATTTACAAAAGCTT

Associated Phenotype:

Not determined