Busch Lab

ZMP

zgc:122977

Ensembl ID:
ENSDARG00000019341
ZFIN ID:
ZDB-GENE-051120-147
Description:
Gpc1 protein [Source:RefSeq peptide;Acc:NP_001032450]
Human Orthologue:
GPC1
Human Description:
glypican 1 [Source:HGNC Symbol;Acc:4449]
Mouse Orthologue:
Gpc1
Mouse Description:
glypican 1 Gene [Source:MGI Symbol;Acc:MGI:1194891]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa14273 Nonsense Available for shipment Available now
sa13289 Nonsense Available for shipment Available now
sa24116 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa14273
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022704 Nonsense 102 554 2 9
ENSDART00000125450 Nonsense 111 563 2 9
Genomic Location (Zv9):
Chromosome 22 (position 15685865)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 15513874
GRCz11 22 15540257
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGGTSAGAGAAGCAGGACGATCYATTCAAGCTTTGCTCAATGCTCAGTAC[A/T]GAACCTTTGACAGTGAGTCANACAGCTCNTTTTTGGGYTTTGAGATCAAAT
Long Flanking Sequence:
AGAAATGGATAGATAGATGGTTGGATGTGAAACAAGTATAAAGTACAAATTGATGGATGGATGGATAGTTGAATGAATGGAAAACAAGGAGGAAGTATGAAGGTATAGATGGATGGATGGATAAATGGATGGGAATATACTGTTTTTTTTTCATTCCTCACACATTACAAACATGATCACTACCTTCATTGGCCTTTGTGTAAGCATGACATTACATTTAACCTTTTCAGGCATCAGGCTAAATTTGAAACTTCATAGAGTTTGATATATTATGTTATAAGTGTAACTGGCATCTATAGTTCCATAACTAGGTTATAAAGTCTCCCTAAATGAGATTATGTTTCCCTTTTCCAGGAGAGCATCTCCGCATCTGCCCGCAAGGTTACACCTGCTGCACCAGTGCCATGGAGGAAACGCTGTCGAACCTGAGCCGCAGAGAATTTGAAGGCCTGGTCAGAGAAGCAGGACGATCCATTCAAGCTTTGCTCAATGCTCAGTAC[A/T]GAACCTTTGACAGTGAGTCAACAGCTCTTTTTTGGGCTTTGAGATCAAATGGTTTTCAGGGAACCTCACTTTTTAAGTTGTCATTTCTCCACCCAGAGTGTCAAGTTAAAGAAAAACAGGGTAGCAACTACAGCAGCTCATAGCGGAAATGAGATTTAGGGGTTTTACAGTGTGCTTGTACTGTCACGAATGGCTGTCTTATCCAGAGCAGCCATTTACCAAACTTCATCTGCTTTTACTTAACATTTTTTCTTTTTACCCATCTGCAGATTTAACGGCATCAGGGTTAATGAATGTGTAGGGTTAAAGAGTTGCAGCACTCTGAAGTCCAAACTCTCTCCTGGTTTGTGTCATTGTAAGCTTAGATAAAAGGAAAACTCTGTAGCTCATATGCTTTCGCACCAAGTGGTCCTTCGCTAGGCAATTACAGTGGGCTTTTATGGCCTTTTACTGCAGTGCACCATTTAGGAATGATAAACTATAGTGACGCCCAATAATGA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13289
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022704 Nonsense 147 554 3 9
ENSDART00000125450 Nonsense 156 563 3 9
Genomic Location (Zv9):
Chromosome 22 (position 15686733)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 15514742
GRCz11 22 15541125
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TRTATCGACTGAATGCAGGAGTGTTTCGTGACCTCTATGCCGAACTGCAT[C/T]GATATTACAGTGGTGCTTCCCTGAATCTCGAGGAGGCCTTGGATGAGTTC
Long Flanking Sequence:
AAAAGGAAAACTCTGTAGCTCATATGCTTTCGCACCAAGTGGTCCTTCGCTAGGCAATTACAGTGGGCTTTTATGGCCTTTTACTGCAGTGCACCATTTAGGAATGATAAACTATAGTGACGCCCAATAATGATTTTGATGCAGCTGTTGGAGTTCCTAACTCTAATCAGACACTTCCTGCAAGTCCCCAACAAACTGTTTACAGGCTATAAGCAACTTTGCAAGTATGTCCGCTTATTCTTCTAACTCTAAACTCCATCCTGACAGTACACTAATACTCTAATGAGAGTTAGTAGTTGCCAACAGGATACCTAAAGAAGATTCATTTGGTTATTAGTATTCTTCTGTGAAAAGTGACTTCTTTTTTTATCCTTTCAGCATATTTCCTGGAACTCCTGAATGGCTCTGAACGGTGGTTAGAGGAGGCTTTTGTGGCTGCACTTGGAGAACTGTATCGACTGAATGCAGGAGTGTTTCGTGACCTCTATGCCGAACTGCAT[C/T]GATATTACAGTGGTGCTTCCCTGAATCTCGAGGAGGCCTTGGATGAGTTCTGGATGAAGCTCCTGGAGCGACTTCTGAAGGCGTCTGACCCTGAAACTGCCTCCCTGCTCTCTGATGACTTCCTTGATTGTGCCTCCAAGCAGACCGAGACCCTGCGTCCTTTTGGAGATGCTCCACGGGAACTAAAGGCCAAGCTGGTGCGGGCATTCATTGCGGCTCGGGCATTTGTCCAGGGCCTTAACGCAGCTGGAGAGATTGTACGGAAGGTGTCTCAGGTACAGCAGATTTCTTTCTTTTTTAGGATGCTGTGATGTAGTGGTTAATGCCTAGGGCTGGTAACCGGAAGGTTGTCGGTTTGATCCCCACAAGATGCATGCCCTGTGCCAAGACCATGCTGCCTTTGAGCAAGGCAATTAATTCCAGAATGCTCCAGGGTGAAGGGCGGCATTCAAGCATGAAAGTTAAAAACAAGGGTTCGACTAAATAAGTTAAAAATAAAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa24116
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000022704 Nonsense 506 554 9 9
ENSDART00000125450 Nonsense 515 563 9 9
Genomic Location (Zv9):
Chromosome 22 (position 15693647)
Other Location(s):
Assembly Chromosome Position
GRCz10 22 15521656
GRCz11 22 15548039
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCAGTGGCTCGGGAAGCGGCATGTGTGCGGATCACCTGTGTGTTCGTGGT[C/T]GACCTCCGGTTTTTGGGCCGAAAACGGACAGGCCCAAACTCTATGCCACT
Long Flanking Sequence:
GGTTGTGGCTGGAAGGGCATCCGCTGTGTAAAACAGGCTGAAATAGTGGGTGGTTCATTCCGCTGTGGCGAGTGATAAAAAAAAAAAAAACTAAGCCAAAGTAAAAAAATTAATTGATGAGTTTCAATTTTGCTACACTGTACACCACTTTGGTGTGTTTACATTTGCAGTTTTGTCTATTTAATTCCAAATTAACACAATTCACTATTTAATTACAAGTGAAATATTCTAAATGTGATACATGTGTAAACAAAACATTATGTTTGTTCTACTTCTGTCTCTATATATAGCACTATTATAAGGTTGGGTGGTCTTTGCAATAGTGATTTTTGTCTCGAAGCGTAATGCAATTTCAAGCAAATTAGATACTGCATAGCAATCATTATGTCTGTAGCCTATTTACCAAAGTAATCATGATGTTTTTCTATAATGTGTTTCTAGGTGATGATTTCAGTGGCTCGGGAAGCGGCATGTGTGCGGATCACCTGTGTGTTCGTGGT[C/T]GACCTCCGGTTTTTGGGCCGAAAACGGACAGGCCCAAACTCTATGCCACTGGGCCTGAAAACAAAAGAGTCAAAGGATCCGGGAACCAGATTCAGCCTTCTTTCATTTTACTGATTGTGTTCTTTGTGAGTCTATTGCTCAGACGATAATGGAGATGCTAAATTGAACTTTGGGTTCTGGGTCAGGAAATTTGGATTATGACCAGGAATGTTGAGGAAAAATTGAGAAAGTGGGAACAGGTGAGTGTAATCAAAATTGCCAAAAGAAAAAAAAGGAAGCATTTTGAGTGAAAGGACATTTTAATTCCTTTGGAATAGGTTGGAAAGGAATTGCTTTTGTGTTTTTTTTATGTTTTGTAATATACGTCAGATTTGAGTGCTGACTTGTTGCATCAATCGTCACATTGCTTTTTTTTTACCTTTGAATGTAAACAGATGGACAGGAGGAATGATGGTTTAGAGATACAATATGAGCTTCTTGAAAACATAAGTGACTTACCC
Associated Phenotype:
Not determined