ZMP
lhx9
Ensembl ID:
ZFIN ID:
Description:
LIM/homeobox protein Lhx9 [Source:UniProtKB/Swiss-Prot;Acc:Q1LWV4]
Human Orthologue:
LHX9
Human Description:
LIM homeobox 9 [Source:HGNC Symbol;Acc:14222]
Mouse Orthologue:
Lhx9
Mouse Description:
LIM homeobox protein 9 Gene [Source:MGI Symbol;Acc:MGI:1316721]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa14260 | Essential Splice Site | Available for shipment | Available now |
| sa37520 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa3161 | Nonsense | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa14260
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000054807 | Essential Splice Site | 126 | 396 | 3 | 5 |
| ENSDART00000079556 | Essential Splice Site | 126 | 330 | 3 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 24978116)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 23236845 |
| GRCz11 | 22 | 23251625 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TAAATGTTTTCATCNNNNTATGTTTGATTGTAAATGGTGTGTGCTGTTCC[A/T]GAAGGTTCTCCGTGCAGAGATGTGCCCGCTGCCACCTCGGCATATCCGCT
Long Flanking Sequence:
CGTGTTTCGCAAAGGATGGCAGCATTTACTGCAAAGAGGATTACTACAGGTAAGCATTAACTTTGAGGCTTAAATCTTGCGTTAGGCCTGTTTAGTAGGCCTAACTTTTTTTTTCGAACACACATAAAGGCTGGTGACATCTGAGCTAGTGTAAGCCATTGACCCATATAGTGATCTTCAGTGATTAACTGACACGCCTAAATTAATCTAATAAACCTAATTAATTCATGCTCAGTGCGTCTATTTTTCTATTCAATTTTTAGCCAGTTGTTTTTTTTAAGGAAAACGAATTATGTCAGACTATAGAAGATACAACCATTTTTCCAAATAAATGTACACATATATAAATAATAGCAAATGCGTGCATTTAAAAGATTTTGATTAATAAAAATATCTAAATTTCACGTGCACCCGCTTTTTATATGTTAAACGTATTTGTTAATGACATACTAAATGTTTTCATCAATCTATGTTTGATTGTAAATGGTGTGTGCTGTTCC[A/T]GAAGGTTCTCCGTGCAGAGATGTGCCCGCTGCCACCTCGGCATATCCGCTTCGGAAATGGTGATGCGCGCCAGGGACTCCGTGTACCATCTGAGCTGCTTCACCTGCACCACATGCAACAAAACACTGACCACGGGTGACCATTTCGGCATGAAAGACAACTTGGTTTACTGCCGGGTTCACTTTGAGACCCTTATTCAGGGAGAGTATCACCCTCAATTAAACTACGCTGAATTAGCGGCCAAAGGCGGAGGGCTTGCGCTGCCTTACTTCAATGGCACCGGCACGGTGCAGAAAGGAAGGCCACGAAAGAGGAAGAGTCCGGCGATGGGGATTGACATCGGCTCTTACAGCTCAGGTGAGATGTCAATTTACAGCTGCTCAGTGGCGTTGCTCACCATTTATTTTGGTTTATTTCTGAGTGTTCGTGTTCGTTTTGTTAGCGGAGTAATTTGATTCTTAATTCGAATCTTTCGGCTTTCGAAAAAGACGATCAGGACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa37520
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000054807 | Essential Splice Site | 312 | 396 | 4 | 5 |
| ENSDART00000079556 | Essential Splice Site | 312 | 330 | 4 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 24974474)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 23233203 |
| GRCz11 | 22 | 23247983 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACTTAAAACAACTCGCCCAAAAGACAGGACTGACCAAGAGAGTTCTTCAG[G/A]TAAGAGTCGCCACACAGTAGACTCCATTTCACATCCAAACCGACACTTTT
Long Flanking Sequence:
GCTGAATTTAAACACGGTTGTGATCAATTTAATACTTTTTAGTGATAAAGGTTCTTCATTGATTAGATAACGAAATTCAAAAACTTTATAATGAAACATGGTTGTTTAGAGTGATAAAATGTTCATCTTGTGTATTTAAACATTGACAAAACATGAGAGCAAAGCTTTATAGTTTCATCTTGCACTGTATTTGAATCACCAATGTCTGGTCTGAACACTCATACTCACATTAAATATCATTTTGATCTTTGACAATAATCTAAATAATTCTCATTGCTTTATTTTCGCCCAATTTAGGTTGTAATGAGAACGATGCGGACCATTTGGATCGGGATCAGCAACCCTACCCTCCTTCCCAGAAGACCAAGCGCATGCGTACATCATTCAAACACCATCAGCTTCGCACCATGAAGTCCTACTTTGCCATTAACCACAACCCCGATGCCAAGGACTTAAAACAACTCGCCCAAAAGACAGGACTGACCAAGAGAGTTCTTCAG[G/A]TAAGAGTCGCCACACAGTAGACTCCATTTCACATCCAAACCGACACTTTTCATTGCACCCTTTGAGTTTCTGTTTGAAATCCATCCATCATTTTTTGATCATGTAGTTGCGGTTTAAATTTCAGAGGCTTAATTCAAGGGGCAATACTTATGCACCGAAAAAGAAAATCCATTAGGGATATTAATTTGGAGCATGGTCCATGTTTTTCAGTAGAATCCCTAGCAAAAGCAGAGGCCTTGTAGAGCCTTTCGATTCACTTTGGCATTGTTTAGTAGTGATTATCTTTGTGATGTTAACCCTCATAACACATTCTAAATATGTATTCTGTGTATGCATTCCAGGTCCGTTTGTTTCTGTAAAACAAATTTCTGCTTAACTTTAAAACTGAAAACGTAACATTTTATTTAAAAAAATCTTAGTTATTAGCAAATGTGTTAAAAGTGCAATGATACAATGTTATTACCATTTAACTACAATGTAATTGTACCATTTACCTTTTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa3161
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000054807 | None | None | 396 | None | 5 |
| ENSDART00000079556 | Nonsense | 315 | 330 | 5 | 5 |
Genomic Location (Zv9):
Chromosome 22 (position 24970146)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 22 | 23228875 |
| GRCz11 | 22 | 23243655 |
KASP Assay ID:
554-2646.1 (used for ordering genotyping assays)
KASP Sequence:
TGCTCTGTAGTTTAATATATTGTTACTTTATGATTTTTTTTCAGGGAGAA[C/T]AAATCTTGGGGCATTACAGCCATACTTCACGACGTTTGAAAATTCCCTAA
Long Flanking Sequence:
AAGATTGTCCATGTTTCCTTGTTTCTTGAAAAAAAAGATGGTGTATAGAAACTATTTCCCCTTAAATATTTATGGACCAAACAGTTGTTATATCTTATTAAATTTGTGTGAATAAAACTACTTTGCTTTACCAGCGTTTTATTTTTCATTACACAAACCATTTTATTTGTGTGTGTGTGTGTTGCTTTCAGATTTAAACTTCTTCTCACAACCAAACAAAAATGACAGATCGAACCTTGTCTTGCTTTCATTCTGACATCGATTTCAGACTATATTCTGTTTCTGTTGTTAAAGTAATGCCCCATGGATTTGACCCAAAGCCCTGTAGTCAAGAAAAGATGCTTTTTAATGCATGAACATGGCTACTTTTTTCACAGAAATGCCAGCTTAGAAAGATCTTTTTTTTTTTTTTTTGAAAAACTAGTAAACATAAACCTCTCAAAGCAAGGTTGCTCTGTAGTTTAATATATTGTTACTTTATGATTTTTTTTCAGGGAGAA[C/T]AAATCTTGGGGCATTACAGCCATACTTCACGACGTTTGAAAATTCCCTAAAGTATTAAAAGAAGCTTTGATCGGAATTCTTCACCATTGAAGACAAAGACAGTATTAGGATCAGATTTTAGTCATTTCAAATCTACCAAAAAAGAAAATGATGTTTTCCAAAATCTTTTTGTTTTTCCTCTTTAAAAAACATCCTGAATGATTAAAAGCCTTCTTCTACAACAAATGGGATATTTTTTGTGACTGTAATGAGGCCAAAAGGCAAACTAAGCTGTACAGTATTGTAGATACGTAACAGAGCAACCTTGCTCCAAGAGGCGACTGCAGGAGACGGATCTACGCACGCATGCATGTCTACACACACACATATACACAAACTACCTTGTAATTCTGCTTGCTGTAAAACATTCCTGTGCAACAAATGTCACTTATCATGAACGCACAGCCTTCCTAAAACTTGGCAGGAAAATGTCCGACCAGGAGAAGCTGGAAAGGAACACC
Associated Phenotype:
Not determined