Busch Lab

ZMP

si:dkey-202m9.3

Ensembl ID:
ENSDARG00000079752
ZFIN ID:
ZDB-GENE-041111-303
Human Orthologues:
COL6A5, COL6A6
Human Descriptions:
collagen, type VI, alpha 5 [Source:HGNC Symbol;Acc:26674]
collagen, type VI, alpha 6 [Source:HGNC Symbol;Acc:27023]
Mouse Orthologues:
AC119951.1, Col6a4, Col6a6
Mouse Descriptions:
collagen alpha-5(VI) chain precursor [Source:RefSeq peptide;Acc:NP_001161395]
collagen, type VI, alpha 4 Gene [Source:MGI Symbol;Acc:MGI:1915803]
collagen, type VI, alpha 6 Gene [Source:MGI Symbol;Acc:MGI:2444259]

Alleles

There are 14 alleles of this gene:

Allele Name Consequence Status Availability
sa17668 Nonsense Available for shipment Available now
sa22900 Essential Splice Site Available for shipment Available now
sa565 Nonsense Available for shipment Available now
sa14196 Nonsense Available for shipment Available now
sa12050 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa17668
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109703 Nonsense 219 2543 2 39
Genomic Location (Zv9):
Chromosome 16 (position 38081187)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 36721670
GRCz11 16 36675554
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AGTTTACTGATGTAWTTGTGTTGGTGGACAGTACAGCTCAGGGGGAAAYA[C/T]AGCAAATAAGGGAACTTCTCAACCGACTGCTTGTGCAGCTCAATGTGGGY
Long Flanking Sequence:
ATTAATTGGAAGGCCTGGGGTTGGCTGACTGAAATTAAAAGTCAGTGTGCAAATACACCATTGCAAGGCAAACAACTTACTGTATGCATTGTTTTAATCAAGAATTAGACGCTCTTGTGGGCTGTTCGCACAAAACCCTTTTTTTGCTTTCCATTGCGCAGTTTTTTCCACATTTTGTTTCATAAACATGGACAGATGTGTTTAACCAGTTTCCTGCGTTTTGTTTGTGACTTTCTAAAAGCATGTTGCTTAAGTTAACAGATTGTCTGCCCTGAGTCTGGTGTTTTTAAAAGCACAAATGTGTTTTGTTTTATTTTTAAGGAACTTTGGTGATGAGGGTTCATTTGTAAGCAGTCATGGTATTAAAAATTGAACATCCATGTCTTTACAGTGCAGATGTATAAATGAATCGTAATTTCTTCTTTGTCTTTGTTTCAGCTCTGGCCCCGAAGTTTACTGATGTATTTGTGTTGGTGGACAGTACAGCTCAGGGGGAAACA[C/T]AGCAAATAAGGGAACTTCTCAACCGACTGCTTGTGCAGCTCAATGTGGGTGACGGATCTAATAAGATTGCGCTGGCTCAGTTTGGTGAGAACGTCGTCAAAGAGTTCCTGTTTAAAGACTACCAAACAGCGCAGAAAGCCAGAGAGTTCATAAATCGGTTCGAGCCCAGGCTTAATGGAGAGCGAAAATTGGGAAAAGCCATAGATTATGTTCGCACAAATTTTCTGAACACAGTATCTGGCAGCAGGATCGCGAAAGGCTACAAGCAGTATCTGCTGGTGCTGAGAACTGGAGACTCTTACGACTCTACTGTGAGGGCCATACGAACAATGAAGAATGAGGACGTGTCCGTCATTGATATCAGACTGGAACCAAATTTACAATCCTTGTTCCCCTCACTACGTGCCTTCCAGATCGACCAAAATGTTATTGATGTGGCTGCTGACGTCACAAAAAGAATTCAGGAGAAAGAGGTTTTCAATGTTACAGGAGGTTGGTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22900
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109703 Essential Splice Site 1672 2543 17 39
Genomic Location (Zv9):
Chromosome 16 (position 38106298)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 36746781
GRCz11 16 36700665
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCAGGAAGCTCAGGAAGCCCAGGACAACGAGGCCTGAGAGGAGATCCGG[T/G]TAGTAGAATTCAGCTGCAAATAAATCTCTTAAAGGGATAGTTCACCCAAA
Long Flanking Sequence:
AACTCTACAGTTTAACAAAGTGACTTTTATTAGCATTTAGTAGCTTAAAATAATATAATGTATAAAAAATATTATATAGAGAAGTAAGTCTGTAAAATAAAAAGGTTTTGCAAGGTTTATGCAGGATTTTTGTGTTATATACAACACCAACCCAGAAACTATGTCACTTTAAATTATTAAAGATGTTAAAAAACGTCACTTTTTTAACTTTTCAAGGATAAAAATTTTTGGAAGAAAGATCATGCCTTGCATTTTACTTTTTGAAATTTTCAGGGTAAAACTGGAGCACCGGGAAGTCCAGGAGAGCGAGGAGATCCAGGCAATCCGGTAAAATACACCACTTATGTTCCTCTCAACTATGATCCAGTCTCGCTGTAGTGCTCCATCTTCTCTGATTTATACATATGTATCGTCTTTGTTTGTTACTTTTGTGAAGGGTCCAACAGGTATTTCAGGAAGCTCAGGAAGCCCAGGACAACGAGGCCTGAGAGGAGATCCGG[T/G]TAGTAGAATTCAGCTGCAAATAAATCTCTTAAAGGGATAGTTCACCCAAAACATTTGTTTATTCACTTTCCTTCGGCTTAGTCCCTTTATTCATCAGGGGTTGGCACAGGGGAATGAACCATCAACTTATCCCGTATATGTTTTACACAGTGGATGCCCTTCCAGCTGCAACTCAGTACTGGGAAACATCCATACACACTCATTCACTCTTATTTAGTTTATTCAATTCACCTGTACCGCCTGTCTTTTGGACTGTGGGGGAAGCCATAGCACCCAGAGACAACCCACGCCAACACAAAGAGAACTTGCAAACTCCAAACAGAAATGCCAACTGACCCAGCCAGGACTCGAACCAGCGACTTTCTTGCTGAGGCGACAGTGCTTATCACTGAGCCATTGTGTCCCCCCTCACCCAAAACAACAACAACAAAATTCTTTTATTATTTACTCAGCATTCACTTGTTCCAAACCTGTTTTTTTTCCGTTTTTTTAACACACAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa565
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109703 Nonsense 2034 2543 32 39
Genomic Location (Zv9):
Chromosome 16 (position 38113026)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 36753509
GRCz11 16 36707393
KASP Assay ID:
554-0475.1 (used for ordering genotyping assays)
KASP Sequence:
GAGTGCGAAAAGGCRTCCTGATGAGGAAGGTTGCCATTTTCCTYACTGCT[G/T]GAGAATCTCAAGATTCGATATCTCTCACCACTGCCATTCTAGAGTACAAA
Long Flanking Sequence:
TTTGTATAAGGCTAAAGGGCTTCTTCATCATCCTTACAAATAAATATTATATTTAATTTGTGAATTATCTGTCATGTGTACACAATTAAATATGAAACTCTTCTACTGAATGTGTTCTTCTAGACAACATAAAATGTCCGGCATACCCCACTGATCTTGTGATTGGCATGGACATGTCTGAAGATGTGACCCCTCAAGGCTTTGAGCGCATGCGTTCTGTGGTCCTCAGACTGCTGGACAACATGAAAATTGCAGAGAGTAGCTGCCCGACAGGGGCTCGAGTGGCTCTGGTGTCCTACAGCTCATTCACCAAATACCTGATCCGCTTTAACGACTACCACCGCAAGAAGCAGCTTATCGATGCCGTCAACAACATCGCCCTGGAACGCACTTCAAATCGCCGCAACATTGGCGCTGCCATGCGGTTTGTGGGCAGAAATGTTCTGAAGCGAGTGCGAAAAGGCATCCTGATGAGGAAGGTTGCCATTTTCCTCACTGCT[G/T]GAGAATCTCAAGATTCGATATCTCTCACCACTGCCATTCTAGAGTACAAAGCCCTGAATATTAAACTTGGGGTCATTGCTCTGAGGAATGTCCCTGCTATCAGGAGAGCTTTTGAGGTAAAGATGAGTGCCTCATAAACAAAATGTTTAAAAATAGCTGATTGATTTAAAAGTGGTTAACTCTTTAAATTGGTTAACTTTGTATGCGTTTTTAACTCCAAGGTGACCAGTTGTTTGAACTACTATAATTCACTAGTATTATTCAAACTAAAAACATCTCATCCACAATGACCTGAGCACTTAAAAAAACACTCCCCCCCCTCCTTAGCTCTCCCTGAGCACTAACTGTTACTTTTTATAATTAGCACTTCTTGCGTGTATTGCCTCTTCTTGTTAAATCACTGAATGTCTCCTCATTTGAAAGTCGCCTTGGATAAAAGCATCTGTTAAATGCAACATAGGCTCATTGTGAAAACATAGCCCTGTATACATTTCTGGAGA
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa14196
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109703 Nonsense 2294 2543 34 39
Genomic Location (Zv9):
Chromosome 16 (position 38115224)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 36755707
GRCz11 16 36709591
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ACAGTGGGAGACTCCATCGCCTCTAGTCAGGTGGAGGAGCTTGCCAGCTA[T/A]CCTTTAGWACAGCACATCATTCACCTGGGCCACTTGAAACATGGAGAACA
Long Flanking Sequence:
GACTTTGTGATGGTTGTGGACGGGTCCCGTAGCATCCTGGCTGACGAGTTCAAGGGTGTCAAGGAGGTGCTCGGCGGTGTGCTCGATCAAATTGTTGTGAGCAGTCAACCCACCAGGGCTGACAGACAGGCCAGAGTGGCTCTCTACCAGCAGACGTCTACCTATAGTGACCCCCAGCCTGCACACGAGATATTCAGCTTACGTGAGTTCTCTGATCGCAATCTAATGAAGACAAGCATCATCCAAAAACTAAAGCAAACCGGAGGATCTCATGAACTGGGTTCTACTTTGGAGTTTGCTTTCAAGAAGTGTTTCAACGCAGTTCCAGAAAGTCGCAAGAACAAGATGCTGCTGGCCATCATTGGGGAGGAGACAGCGTTACAGGAGAAAAAACGTCTGGACTCTTTCTCCAGGTTGGCGAAGTGTAGCGGCATTGTTCTTTTCACCTTGACAGTGGGAGACTCCATCGCCTCTAGTCAGGTGGAGGAGCTTGCCAGCTA[T/A]CCTTTAGAACAGCACATCATTCACCTGGGCCACTTGAAACATGGAGAACAGGAGTACACACAACGCTTCATGAGGACTTTCTTCCATATACTGAGCAGTAAGGAGTGTTTCATGTTAATGCTGATTTGATTTGGGTCAAAAGAATTGCAGTAGTTATTCTGGTGGCTATCTTGCCTCTCTAATGTTGCTCAGAAAATGCAACAAACATCATAAAAGGTATCATTGTGAGCCTTATAGCTTTACAATAGCTTTATGTGAGGAACAAGTCTAATTTCAGTTTATACCATGCTTTTTGGTAAACCAGGGCAATGTCAACAGAACCTGACTAAAATGTAACCCTGGACCACAAATGTTGCGCAGGTATACACATTTTATTGGTCAAAATGTGGCCAAAATGATCAAAAATATGACTAAAAATCAATGTTTCATGAAGATTTCTTTGTAAATTTTCTACTGTAAATATTAAATCTTATTTTTTATAATAATATTAATAATTCCTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12050
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000109703 Essential Splice Site 2327 2543 34 39
Genomic Location (Zv9):
Chromosome 16 (position 38115323)
Other Location(s):
Assembly Chromosome Position
GRCz10 16 36755806
GRCz11 16 36709690
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAGGAGTACACACAACGCTTCATGAGGACTTTCTTCCATATACTGAGCAG[T/C]AAGGAGTKTTTCATGTTAATGCTGATTTGAWTTGGGTCAAAAGAATTGCA
Long Flanking Sequence:
AGCAGTCAACCCACCAGGGCTGACAGACAGGCCAGAGTGGCTCTCTACCAGCAGACGTCTACCTATAGTGACCCCCAGCCTGCACACGAGATATTCAGCTTACGTGAGTTCTCTGATCGCAATCTAATGAAGACAAGCATCATCCAAAAACTAAAGCAAACCGGAGGATCTCATGAACTGGGTTCTACTTTGGAGTTTGCTTTCAAGAAGTGTTTCAACGCAGTTCCAGAAAGTCGCAAGAACAAGATGCTGCTGGCCATCATTGGGGAGGAGACAGCGTTACAGGAGAAAAAACGTCTGGACTCTTTCTCCAGGTTGGCGAAGTGTAGCGGCATTGTTCTTTTCACCTTGACAGTGGGAGACTCCATCGCCTCTAGTCAGGTGGAGGAGCTTGCCAGCTATCCTTTAGAACAGCACATCATTCACCTGGGCCACTTGAAACATGGAGAACAGGAGTACACACAACGCTTCATGAGGACTTTCTTCCATATACTGAGCAG[T/C]AAGGAGTGTTTCATGTTAATGCTGATTTGATTTGGGTCAAAAGAATTGCAGTAGTTATTCTGGTGGCTATCTTGCCTCTCTAATGTTGCTCAGAAAATGCAACAAACATCATAAAAGGTATCATTGTGAGCCTTATAGCTTTACAATAGCTTTATGTGAGGAACAAGTCTAATTTCAGTTTATACCATGCTTTTTGGTAAACCAGGGCAATGTCAACAGAACCTGACTAAAATGTAACCCTGGACCACAAATGTTGCGCAGGTATACACATTTTATTGGTCAAAATGTGGCCAAAATGATCAAAAATATGACTAAAAATCAATGTTTCATGAAGATTTCTTTGTAAATTTTCTACTGTAAATATTAAATCTTATTTTTTATAATAATATTAATAATTCCTTACATTTATACAGTTCTTTTCTAGACACTTACAGTGCTTTTCACATTGGGGGGAACCTCCGCATCCACCACCAGTGTGCAGCATCTACCTGGATGATGAG
Associated Phenotype:
Not determined