ZMP
smarca5
Ensembl ID:
ZFIN ID:
Description:
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [Sour
Human Orthologue:
SMARCA5
Human Description:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 [S
Mouse Orthologue:
Smarca5
Mouse Description:
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 Ge
Alleles
There are 4 alleles of this gene:
Allele Name | Consequence | Status | Availability |
---|---|---|---|
sa14090 | Essential Splice Site | Available for shipment | Available now |
sa19604 | Essential Splice Site | Available for shipment | Available now |
sa32777 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
sa11295 | Essential Splice Site | Available for shipment | Available now |
Mutation Details
Allele Name:
sa14090
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000024215 | Essential Splice Site | 339 | 1028 | 8 | 24 |
ENSDART00000123972 | Essential Splice Site | 346 | 1035 | 8 | 24 |
Genomic Location (Zv9):
Chromosome 1 (position 53293161)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 52162732 |
GRCz11 | 1 | 52797470 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTGGGCGCTGCTCAACTTCCTGCTGCCAGATGTTTTCAACTCCTCCGAGG[T/G]GACACTTTCTGTCAATTTGATGGATTCTATACYGTCCAGCTTTATTTTCA
Long Flanking Sequence:
TCCCTCCCTAAAAGCCGTCTGCCTCATCGGGGACAGGGAGGAAAGAGTAAGTCTGGTTTTTCGATTGATTTGTATTGTGATTTCACTGATGGAAGAAAACTTTTAATGACTCTGGCCTGCTTGCAGACGGCTTTTATCCGCGACACACTGCTGCCTGGCGAATGGGATGTGTGCGTTACCTCTTACGAGATGCTCATTATCGAGAGAGCCGTCTTCAAAAAGTTCAACTGGAGATACCTGGTTATTGATGAGGCTCACCGTATCAAGAACGAGAAGTCCAAGGTTTGTCTCTTTTACCAGGAATCGATAGCAGACTGATTGTGCGCGCCTCGAAGCTGAAATATTCATCTGGTGGTTTGTCTCTTAGCTTTCCGAGATCGTGCGAGAGTTCAAGACTACAAATCGATTGCTGCTGACTGGAACCCCACTGCAGAACAACCTTCATGAGCTGTGGGCGCTGCTCAACTTCCTGCTGCCAGATGTTTTCAACTCCTCCGAGG[T/G]GACACTTTCTGTCAATTTGATGGATTCTATACCGTCCAGCTTTATTTTCAGGGTTCCCACACTTCTTGAAAGCACTTAAAAGTACTAGAATTTCAGACGGATTCAAGGCCTGGAAAGTACTTGAAAACAAACACAAATGCTTGGATTACATTGAAATTACATTTGTTTATGGTTTTATTTCAACAATTGTACTCATTTGTCAAAAATAAAAGGAGAAATTCCTAAATTAATAATCTTAAATTTAAATATTGTACAATAATAATGACAAATAATGCACAGTAATATCTCACACAATCAATATTTCAGATCGTATTTGAATATCAACAGTATTGAATTAAGATTCATTAAATTTCATTGAACAAGTTTTAAAAATTCCTTTGACGTTTTTAATGTAAATCTTAAGTGTAAATGAAATGTTAAGTGTAGTAAGGGTTTGGCGCTACATGTGCTGGGGTATGCATTGAAAAAGTGCTTGATTTAAAAATGTGAGGTGCTTTAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa19604
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000024215 | Essential Splice Site | 340 | 1028 | 9 | 24 |
ENSDART00000123972 | Essential Splice Site | 347 | 1035 | 9 | 24 |
Genomic Location (Zv9):
Chromosome 1 (position 53294285)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 52163856 |
GRCz11 | 1 | 52798594 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CATCTTAATGTGTAAAGAGTAATTATAGACTAACGTTTTATCTTTGTGCA[G/T]GATTTTGATGCCTGGTTTGACACCAACAACTGTCTGGGTGACACAAAGTT
Long Flanking Sequence:
TTAAAAAAATCAGTTAAACAGACTTTGGCATTCATTTACTTGCTCAAGTGCAAAACAAGACAAAAAGCTGTTTACATGCACTCGCCCTTCAGAATCGGCTGGCTAGCGCAGAAGCTCCATTGAATATACTGGGGTAAAATAAATGCTCATATTTTAAAGACATGGCGGTTGAATATGTAATTTAATGCAGTGCTTCTTGTACAATCTGAGACCCACTTTATATCGGATATCACTCAGCCAGTGGAGATCGCTGATTTTTAAAGAAAACGGACCATAAACGTGCCGTTTTTTGCAATGGCAAACAGTTCACCGGAAGTACTTAACCCAGGTTACTGGCAAATTAAAAGTCCTATTGGCATGCTTCAGCATAAACCCCATTGGAAGTCTTTGAATCTGCTGTTCATGAAAGAATGGAAACTCTGTTTTTTATAGTTGCATAGTGTTTTCTTCCATCTTAATGTGTAAAGAGTAATTATAGACTAACGTTTTATCTTTGTGCA[G/T]GATTTTGATGCCTGGTTTGACACCAACAACTGTCTGGGTGACACAAAGTTGGTGGAACGTTTGCATACTGTAAGTGCTTTTGCTTTTAAAAACCTGTATAGATAATACTTGGTAAATCAGAGGGTGACAAGTTGAAAAATTATCAGTTTATATATTAAAAATATTAATTTATATAAATTCAATTATTTTGTATAAATTTATAATATTTCATAATTTGAGTGGATTTCTTTTTTCCTTCATTTTTTTAAATTTGATGTTGAGATGTTTTAGTTTGATTTCTGAGGTCTATTTTATGGTGTAAATGCTTTATTCATAACCACAAAATGCCCTTTTTGTATAGGTTCTGCGTCCATTCCTGCTGAGACGTATCAAAGCGGATGTGGAGAAGTCTTTACTTCCCAAAAAGGAAATCAAGATATATGTTGGGCTCAGCAAGATGCAGAGAGAATGGTAAAATCATAAAATGAGTCAAAGGTTCCACAAAGTGCTTTGAAATGTGC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa32777
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000024215 | Essential Splice Site | 736 | 1028 | 17 | 24 |
ENSDART00000123972 | Essential Splice Site | 743 | 1035 | 17 | 24 |
Genomic Location (Zv9):
Chromosome 1 (position 53310244)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 52179815 |
GRCz11 | 1 | 52814553 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCCTACTTTCGAGAAGCCCTGCGCGTCAGCGAGCCCAAAGCACCAAAGG[T/C]ATTATTAGCCCTTTAACTCATCGCTGACTAAATCAGTGTTTTAATTGAAA
Long Flanking Sequence:
AAAACAAAGAGGAAGTGCATTTCCAGATTTTAATTCTAGATACAAGGGCAGACTTTTTTTTTGCTTAATGACATGTACTAATGAATTGTTCACCACAAAACTGGGAATGTGAGCTGACAAAATCAATATGGATAGTTTTCATTTGTACTTTAATAGAAACTCTCTTTACAATGTTGGCTTTAGACCATGGAGATGAAGGAGAAGATGGCCAATCTTGGAGAAGGCTCTCTGAGAAACTTCACCATGGACACAGAGAACAGCGTGTATAACTTTGAGGGTGAAGATTACAGAGAAAAGAAGAAGGTAATGCCATGTAAATCGCTGCAATTGCTTGTCATTATAGTCTTGGTTTTCAATGTTGGTAATAGATCTGAACTTCTCTTCTTCTCAGGTCGTCACTAACTGGATTGAGCCACCCAAGAGAGAGCGTAAGGCCAACTACGCTGTAGATGCCTACTTTCGAGAAGCCCTGCGCGTCAGCGAGCCCAAAGCACCAAAGG[T/C]ATTATTAGCCCTTTAACTCATCGCTGACTAAATCAGTGTTTTAATTGAAAACCTTTTCCCCTAGAGCTGTCTTAATGAACTCATCTGATCTCCTCAGGCTCCACGTCCTCCCAAACAGCCCAATGTTCAGGACTTTCAGTTCTTTCCACCTCGGCTCTTTGAGCTGCTGGAGAAGGAGATCCTCTATTACAGGAAGACTATTGGCTATAAGGTGTTGTTTTCCGTCATTTTTATGTTCATTTGTTTGTTTATTTATGTTTTTACATCTTTATTAATATTATTATTATTTGCATTTTTAATTTTAATTTAATTTAGGACATTTTGTCATCAGTTATTCAACTTTATGTAATAAAAAAAACTGATTTTTTTAAATCTTTACACACATCAATATATACTGACTGAGTAAAATTATTTAGAAAAAAGGCAACATTAAATATGTTTTTTCTTTATTTCACCAGGTAAAAACCCATTGAGATCAAGATCTCATTTAAAAGGATGAC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11295
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
---|---|---|---|---|---|
ENSDART00000024215 | Essential Splice Site | 860 | 1028 | 20 | 24 |
ENSDART00000123972 | Essential Splice Site | 867 | 1035 | 20 | 24 |
Genomic Location (Zv9):
Chromosome 1 (position 53312213)
Other Location(s):
Assembly | Chromosome | Position |
---|---|---|
GRCz10 | 1 | 52181784 |
GRCz11 | 1 | 52816522 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCTCGTGAGGTTGAGGGCAAAACCCCAGAGGAGGTCATGGAATATTCTGG[T/A]ACGTCAAARGGTTTTACACCACYTTAYTGATGAGCTTTATTTCAAATAAT
Long Flanking Sequence:
ATTATCCTGAAGTTCCTAATGCATGATGCCACTGTGCAAACAGGTGCCAAGAAACCCTGATCTGCCCAACTCTGCTGAAATGCAGAAAGAGGAGCAGGCCAAGATTGACGAAGCTGAACCACTTAATGAGGAAGAGCTGGAGGAGAAGGAGAACCTCCTCTCACAGGTATACCCCAATAGGGAATGTATGTATGTGACAGCCCAGTGGAGTGTACTTCACCATTCTTTCATACTTACAAGATGCTTTTTCAGTATAATTAATCCCTCAGCATTAACATTAAACTTCTTATCCTGTGCTATCAAATATTTTGACCTCCGGGATAATATTCATGTAGCGGCTGATGTCAATGTGTCCTCTACATCCAGGGCTTTACTATCTGGACCAAGCGTGACTTTAACCAGTTCATTAAGGCCAACGAGAAGTGGGGACGAGATGACATTGAGAACATCGCTCGTGAGGTTGAGGGCAAAACCCCAGAGGAGGTCATGGAATATTCTGG[T/A]ACGTCAAAAGGTTTTACACCACCTTACTGATGAGCTTTATTTCAAATAATGGATTGTGCTTTTGGTTTGGGGAGCTTTCATTCAAACGAGATGTGTTGTGTTTGTGTGCAGCTGTGTTCTGGGAGCGCTGCAATGAGTTGCAGGACATCGAGAAGATCATGGCTCAGATCGAGAGAGGAGAGGCCAGAATCCAGAGGAGGATCAGTATCAAGAAAGCACTCGACTCGAAAGTGAGAAACGCTTTTGTCTAGACCAGCGTGTCTGTGGGATTTTAACAAATTTTTAGGCCTTAAAGTGAACTAATGTATTGTGTTGTAGGACTTAAATGGTCTTAACAGGTCTTAATTTTCTTAATTAACAGGTCTTAATTTTCCTTTGTCAATGCTAAGCTACCAGTCAGGTCTACAATCAATCCAATGACCAACAGTCCATCTCAAAACCTTTTGCAAATATGATTTGTAAACGGTTTACCAATATGCTTTAAGTTCCTAACAACAATA
Associated Phenotype:
Not determined