ZMP

shox

Ensembl ID:

ENSDARG00000025891

ZFIN ID:

ZDB-GENE-051030-21

Description:

short stature homeobox protein isoform 1 [Source:RefSeq peptide;Acc:NP_001119883]

Human Orthologue:

SHOX

Human Description:

short stature homeobox [Source:HGNC Symbol;Acc:10853]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa41471	Nonsense	Mutation detected in F1 DNA	Not yet available
sa1370	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa41471

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

A > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000029238	Nonsense	38	304	1	6
ENSDART00000100735	Nonsense	38	261	1	6
ENSDART00000133996	Nonsense	38	285	1	5

Genomic Location (Zv9):

Chromosome 9 (position 35612766)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	34832277
GRCz11	9	34641462

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

AAGAGAGCATCACGTACAGGGAAGTTTTGGAGAGTGGTTTAGCCCGAGCC[A/T]GAGAGCTGGGAAACTCGGAGACCAACCTTCAGGAGATTACTGAAACAAAC

Long Flanking Sequence:

CCATCCTGCAATATTCATATCCTCTAATTGCGTCAGTGAAATTATCACAGAATTAATTAAACACGGTTCCCATTTCCAATTGACCACACGGCACTGTAGGAATCCTAATTAATTATAATTAAATTAAGGGGACTCCATCCAGTGCGGCATTGATTTGAGGAAAAGCCGCTGAAAGTTGAATTCAGAAGCGCTTGTAATGACTCCAGACATGATGGCGATGGGGGCCGGGCTGAGGTGGCCGTGTATAAATAGTGTGATCTGAAAAACACAGACATAACAGCAGGAGTGATCTAAACCCTTCTCCACGCAAACATTTCGCCGAATCCACAGTTGAGCAGATAAAAGATTCGCGTTAGATTCATTTTTAAAGTGGATTTCTGTAATCAGCCATGGAAGAACTCACGGCGTTCGTGTCGAAATCCTTCGATCAGAAAACCAAGGAGAGCAGCAAAGAGAGCATCACGTACAGGGAAGTTTTGGAGAGTGGTTTAGCCCGAGCC[A/T]GAGAGCTGGGAAACTCGGAGACCAACCTTCAGGAGATTACTGAAACAAACAACAACCATTGTCCGGTACATCTTTACAAGGAGCACGTAGAGCTGGAAAAGGAGAAATTAAAGGAGTTTAGCGTGACAAGGGCTTCTGACGGTGAGTTTCTTCTGCACGCTGTGATAATGTGTTGCGCCGCGCCGGAGACGAGTTTGCAATTAGATCTTCCCGCGAATGCGTTTGACGGTGTTGAAAAATCGACTAAATCTAAACGACTGCATATTAAGATCATTTTCAAGACCATTAAGAGGTTTTCGTTCGTCTATAGAGGCTAACTAGCATGCGAGTGCAGACATCCAAGCTGCATTCAGCTGATGCAATGAGCACTTGTTCCATGATGTGTGCACCGCGTACTGAATTGTTTTTATTTGTAAAAGACAAGAAATACACATAATGCAATCTTAAGAAAGGACATCACACTAAAAGTTTAATAGTTTGTAATTACATTTTACTTGTTA

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa1370

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC

Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000029238	Nonsense	209	304	5	6
ENSDART00000100735	Nonsense	209	261	5	6
ENSDART00000133996	Nonsense	209	285	5	5

Genomic Location (Zv9):

Chromosome 9 (position 35618666)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	9	34838177
GRCz11	9	34647362

KASP Assay ID:

554-1282.1 (used for ordering genotyping assays)

KASP Sequence:

GACTAACTCGCTGTTTGTTTTTGCTCGCCCCGCAGGTYCARGCTCAGTTG[C/T]AGTTGGAGGGGGTCGGAACACACTCCCATCCTCACCTGCACCCACACCTC

Long Flanking Sequence:

GAATACTAAAAAAGAAAATAAAAAATAAGTCACTTTTTAAGCCAGGCGGATGTCTAATTTTCACCTCATCTTACTGAAATAATTGCTAAGAATCTGCAACCTGATATTTTATGCTGCCTGCTTACATCTTTTTTCCCTCTTTTCCCCCAGAGGAACTATGTGAATAAATATTTATATATGAGAATGAATATTTTGGGTGCGAAATTGTTTATTTATGCCATTGAATATATAATTAAGATTACATGATGTTGCAGCTTTTAAACACTGTATGGAGAGATTGGGTGTGGATCAAACTAATATGCTGAGATCTGCAACTGATGGAAGTTCTTTGACTATTAAGCTGTCTGAGCGCATTGCATAATTCAGCTAGAGATCAGATGGAAAGGAGTGACTGAAAAAAATGGGTGAAAGCAGATCCCCGCCGCTCCTTCAGCTGACCCAGCGGCCGCTGACTAACTCGCTGTTTGTTTTTGCTCGCCCCGCAGGTTCAGGCTCAGTTG[C/T]AGTTGGAGGGGGTCGGAACACACTCCCATCCTCACCTGCACCCACACCTCGCAGCCCACGCTCCATATCTGATGTTCCCTCCTCCGCCCTTTGGATTACCGATCGCGTCGCTGGCAGACTCGGCCTCTGCAGCGGCCGCCGTGGTTGCTGCTGCCAAGAGCAATAGCAAGAACTCCAGCATCGCTGACCTGCGACTCAAGGCAAGAAAACACGCCGAGGCGCTGGGACTCTGACCCCCATGGGCTTCTCTGCTGCTCTGAACTGATAATTGCTTCTAACACAAGACTAAGCCTGTGAAAAGGCCGTGACACTCACAGTTAAAACAAAACAAAATAAAAACAAAAAGGGGTGTAAGGGGAGAGAATGAGAGCGAGAAAAAAAAAGTCACAAAAAACCAGCTGCCAAAACAAACCACTTGTAGAGAAAGGTAATTAAATACCAATGAATCACCTTTTACTTTTCGCCCAACAGGCAGGACTTCTTGGAGGCCACTGGCTCAG

Associated Phenotype:

Normal

Stage	Entity	Quality	Tag
Larval:Day 5 ZFS:0000037	whole organism ZFA:0001094	quality PATO:0000001	normal PATO:0000461