Busch Lab

ZMP

si:dkey-61l1.4

Ensembl ID:
ENSDARG00000092567
ZFIN ID:
ZDB-GENE-070705-483
Description:
Novel collagen protein [Source:UniProtKB/TrEMBL;Acc:A5WWD4]
Human Orthologue:
COL16A1
Human Description:
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Mouse Orthologue:
Col16a1
Mouse Description:
collagen, type XVI, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1095396]

Alleles

There are 4 alleles of this gene:

Allele Name Consequence Status Availability
sa1363 Nonsense Available for shipment Available now
sa10054 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa1363
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000143098 Nonsense 444 1194 26 56
ENSDART00000145848 Nonsense 430 1253 24 58
Genomic Location (Zv9):
Chromosome 5 (position 30855490)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 28616847
GRCz11 5 29217000
KASP Assay ID:
554-1275.1 (used for ordering genotyping assays)
KASP Sequence:
TTTTTGTAGTTGTGATTAGATTTAGAACTGTTTTCTTGCTCTCAGGGCTA[T/A]CCAGGAGCCATCGGCCTTCGTGGACCGCCAGGACACACAGGAGAAAGGGT
Long Flanking Sequence:
AAAAAACATTTGTTTTTAAATGTAGTTGGTTAAACATTTTTTCTAGCTTTATGTGGATATATTTCTCATGTCTGTGAAGCAAGTATTCACTGTTTGTTGACTCTAGATGTTTAATAACTACTGCAGAAACTGTTGTAAAAGCACACGTCTGGTCCAAACCCCTCTCAGGGGGGAAAAGTCAGTCTATAGCGATCGATGATTGGCTCCTGTACTAGAAGGCGGGGCTTCATTTACCATATTGATGTTACGCATTTGAAACTAAATGAGCCACATGTCTTGTGTATTCTATAGTCTTTAATATAAATCAGTGTTTATATATATATATATATATTATGTGGTCTGTGTGTGATTAGGGCTTCACTGGAAAAGCTGGCTTGGCAGGTGCTCAGGGGCCTGTAGGCATGTATGTAAGTGTCGCTATCCAGTTTGATAAGATTATTCATGATATACTTTTTGTAGTTGTGATTAGATTTAGAACTGTTTTCTTGCTCTCAGGGCTA[T/A]CCAGGAGCCATCGGCCTTCGTGGACCGCCAGGACACACAGGAGAAAGGGTTTGGAAGTTTTGCATATTTTACAATGAAACTTCTCTAATAATTCTGGATGTTGTATCATATCATGTGTGTATGTATATAGGGTGAACCTGGCATTAGGGGACCATTAGGACCACCAGGGAAAAGAGGACCACCTGTAAGTTGAGCTGTATGTCAGGAAGTATCATTCATTTTATGACACCATGGTCACTTTTTGTCTAAAACTAATGTTACCCTGTTGATCTTCTAAGGGTTTAGCTGGCCCAGCTGGAGAGAGAGGCTCACGTGGACCCCCGGTAAATTTACTTAAGGATTCAAACAGACAAGATGTATTTTTTAAACTTTATTTGCTGAACTTTTTTGAATACAGAGAGGTTATCTGTGATGTTTCCAACTTTTTTAGGGTCGCCAAGGAGAAACTGGACCTACGGGCTTCCAAGGACTGCCTGTATGTAGCCCTCAGTAAAGCACAT
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461

Mutation Details

Allele Name:
sa10054
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000143098 Nonsense 771 1194 40 56
ENSDART00000145848 Nonsense 776 1253 39 58
ENSDART00000143098 Nonsense 771 1194 40 56
ENSDART00000145848 Nonsense 776 1253 39 58
Genomic Location (Zv9):
Chromosome 5 (position 30851277)
Other Location(s):
Assembly Chromosome Position
GRCz10 5 28612634
GRCz11 5 29212787
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GCCCAAAGGGTTTCYCAGGACAAGAGGGACCWAAAGGTGAACCAGGAARA[C/T]GAGGACCGCCWGGRCTGAAAGTGAGATTSWGAAATAAATGAGAATTTATA
Long Flanking Sequence:
TCCTTGATCAGGATTACCCTTATACATTTCCTAATGCAACAGTCCTGCTCTTTGTTTTAAAAGGGTGAAACTGGATCACCAGGACCGAATGGATATCCAGGAGATCAAGGCAATCAGGTAAAATCAATGACCGTTTTCCAGAATACAACCGGTTGGGTAAAATAATCGGCATATTGCATATGTAACCAAACTGTGAACAAGACAGAAGTGTGACACATTTGACTGCTACCTGAGATTACAGAAACTTCTCAATGTCAGATTAATGCCATGCTGTTTTTTTGTCTACAGGGGCTGGCTGGCCGGAGGGGTTTACAAGGGGTTATGGGGAAGGCAGGACCTCTGGTAAGTATGGCTAACGTTTCAAGGTAAATCAGTGCTAGATTTTCAGGGGATAAATAATACTCATATTGCAGGGAGTCGTGGGTCCAAAAGGCCCCCAGGGCTTAATGGGCCCAAAGGGTTTCCCAGGACAAGAGGGACCTAAAGGTGAACCAGGAAGA[C/T]GAGGACCGCCTGGGCTGAAAGTGAGATTGAGAAATAAATGAGAATTTATATAGTGATGTATGTGATGTCAGCTGATCACTGTCTCTCTTGCAGGGTCCACCAGGTCTAACTGGTAATAATGGACCCTCTGGATTTCCTGGAAAAGAGGTAAAACTAAAAATTGGCCAAATAGTTTTTCTGGAATTTTTAATATAAGTATGTTATATATTAAATATAACATTATTGCTTATGTTGTTTGTATATTATCCAAATTAAGCAACATGCTCTTTAGTAAGAGTGTGTGATATTGACAATATTGGTGGTGATGGCTTTATAATTATTTATATTTCCTTCATAATAATAATTGAACAGTAGTTTGCTGAGTATGTGTTTGTGTTCATTAGCAGTATATTAATTCCAAATTGCAAACAATGCACAATTGGAATAGCACATACATCAAAACAAATAATAACAGTGATTAAAAACAAATAAAAACAGATTCAAATGTGTTAAAATAGGTT
Associated Phenotype:
Not determined