ZMP

samd11

Ensembl ID:

ENSDARG00000077852

ZFIN ID:

ZDB-GENE-060428-2

Human Orthologue:

SAMD11

Human Description:

sterile alpha motif domain containing 11 [Source:HGNC Symbol;Acc:28706]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa13428	Essential Splice Site	Available for shipment	Available now
sa43976	Nonsense	Mutation detected in F1 DNA	Not yet available

Mutation Details

Allele Name:

sa13428

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

G > T

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000109516	Essential Splice Site	308	874	5	14
ENSDART00000132418	None	None	167	None	4
ENSDART00000146415	None	None	171	None	3
ENSDART00000146463	Essential Splice Site	308	874	5	13

Genomic Location (Zv9):

Chromosome 23 (position 23383370)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	23	23162677
GRCz11	23	23089228

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

CAGCGAGTGCCCATCTGACAGCAAGAAGTCCCGCAGCGTGTCACCTAAAG[G/T]TAGGGGCCCCTCTCTCGTGCATGTGTGTGCANNTGTGTGTGTGCTGGAGATG

Long Flanking Sequence:

GTTCGCTTTTTTTTCATCTTTTTTTTTTCTCTCCTTCGCTTGTCATTTCTGGAGATTTTAGGCCGGTGTGAAGACCTGGAGCGTTTGCATGCACAGATAGAGAGATAGATAGATAGTCAAGACAAAAAAAAAAGACGAAGATAGAGAGTGAGCGCAAAAGAGAGGGAGCGTGTTTGTTCGAGATAGGAGAGAGAGAGAGAGCGGGTAAAAGAATCTCTCTTTTCTGCACATGGCTGAGTAAGAACCAGATCTGTCATTCACGCTGGCGCAGGGCCCTCTCATCTCGCCGTATCTTTAGTCGCTCTCACAGCTCCATCATGTATGCAGGTACAGAGCCAGGCGTCGAGGGGTTTAGGGGCCATCTGACCGCATCTGAACCCCCCCCTAACCTCTTTTTTTTTCCACAGATGACATTCTAGGCAAGAGGAGAGCCTACTCCCCCAACAGCAGCAGCGAGTGCCCATCTGACAGCAAGAAGTCCCGCAGCGTGTCACCTAAAG[G/T]TAGGGGCCCCTCTCTCGTGCATGTGTGTGCATGTGTGTGTGCTGGAGATGATAATGTGCTGCAATCAGAGCTGTTTAACCTTAGCGTGTAAGATGGAGTAGGTGGGAATAGAAGGGGCGAGATTAAACGAGACTGGAGGGAAGGGGTGGACAGATAGTAAGAGGAGGGAGGAGAAAACAACGCTTGGTGGAAGACAGATATCTCCTCCTCCCCCCTGATCCTGCTAACCTTTTTGCACACTGTCCGCAGAGAGTTTACAAGTGCAGAGTTTCTAAAAGTTGAGCGAAACATTTACATACATTTAAGTCTTAAGTGTGTGGGGGAAAAGTCCAAATTTAGTTATTTATTTTTAATTTTTAATTTAGTTATATATTAAACTTATTTACATTATGTGGTGTTTGTGAGTGTGTGTGTCTTTCAAGTTAAAAATCTTGAACTTGATCAACATTATTTTTGCAATATAGGTTTTATTTTTAGGCTTTATTGTTGAGCATGATTAG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa43976

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

C > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000109516	Nonsense	328	874	6	14
ENSDART00000132418	None	None	167	None	4
ENSDART00000146415	None	None	171	None	3
ENSDART00000146463	Nonsense	328	874	6	13

Genomic Location (Zv9):

Chromosome 23 (position 23390547)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	23	23169854
GRCz11	23	23096405

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

CACACGCCTGCGCTGGAGCCGGGCAGTCACATGACCCCCGAGGAGCACTA[C/A]AGGCGCATGATGTCAGCGCTGAACGAGCATGGCTCTTATGAGGAGCAGCA

Long Flanking Sequence:

GTCCGCTGCGTAAAGCATATGCTGGATAAGTTGGCGGTTCATTCAGCTGTGGCAACCCCTGATTAATAAAGATGAAAAGAAAATGAATGAAAGAATGAATATATTCAGATAGAAAACTATAGCAATCTCTCTCTTTCACACACACATACACACACACACACCTGAAGCCTCTCGGGTGGATTATCTGGCGCTTGGCAGCACACACTCCCCCATCCCCTGCGCTGGGCCACACTGCTTCTGTTCGCCTGCCCGGGGCCAAGCTCTGGTTTCAACGAGGAGGGTAAAATATCCCCCCTTCCTCCCCATCTCTCCCCCAAGAGTCTCTCCTCGTGCTTGAGTTACTGCAAACTCAAAAGGAGAAGCACACATAGACCTCTCCATCACTCAAACACTCATAAGATCATTTGGGGCAACTGATTGAACTGTGCTTGTTGTCCCACAGAAAACTCTCACACGCCTGCGCTGGAGCCGGGCAGTCACATGACCCCCGAGGAGCACTA[C/A]AGGCGCATGATGTCAGCGCTGAACGAGCATGGCTCTTATGAGGAGCAGCAGCAGCGCCTCTACCAGCTGGCCAACAACATGGGCATCCCAAGCCATGGTGAGTGTGCGTCACCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTGTATCCGCTCTAATTACCCATGTAGCTGTATTCCTGGACGCCACACAAACAGCTCGAGCTCGACTGCGGAGATTACTGACAATTCTATTTGCGGTCTCAGCCCACCCAACGGTAGGATGTCAGAGTGGGTGATCTGTGACTACTGCCACACACAGTAGTAAATAACACTGCCATTGGGCCCTGAGGTCGACCGGATCGATTTGGCCCTTTGATTGGCTGCAGGCCAAGCCTCTAAATTACCAACACCATGAAAACAGCTCTCTTTTTTTTCTTCTTTAGCTGTTTCAAATTTACGATCACTGACGAGGTACCAGGGTTAACGGATGCGGATTTGTAAGATTTGTAAACCGAAAT

Associated Phenotype:

Not determined