Busch Lab

ZMP

LOC100150276

Ensembl ID:
ENSDARG00000090614
Human Orthologues:
PCDHB1, PCDHG@, PCDHGA1, PCDHGA10, PCDHGA11, PCDHGA12, PCDHGA3, PCDHGA5, PCDHGA6, PCDHGA7, PCDHGA8
Human Descriptions:
protocadherin beta 1 [Source:HGNC Symbol;Acc:8680]
protocadherin gamma cluster [Source:HGNC Symbol;Acc:8695]
protocadherin gamma subfamily A, 1 [Source:HGNC Symbol;Acc:8696]
protocadherin gamma subfamily A, 10 [Source:HGNC Symbol;Acc:8697]
protocadherin gamma subfamily A, 11 [Source:HGNC Symbol;Acc:8698]
protocadherin gamma subfamily A, 12 [Source:HGNC Symbol;Acc:8699]
protocadherin gamma subfamily A, 3 [Source:HGNC Symbol;Acc:8701]
protocadherin gamma subfamily A, 5 [Source:HGNC Symbol;Acc:8703]
protocadherin gamma subfamily A, 6 [Source:HGNC Symbol;Acc:8704]
protocadherin gamma subfamily A, 7 [Source:HGNC Symbol;Acc:8705]
protocadherin gamma subfamily A, 8 [Source:HGNC Symbol;Acc:8706]
Mouse Orthologue:
Pcdhb1
Mouse Description:
protocadherin beta 1 Gene [Source:MGI Symbol;Acc:MGI:2136730]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa13401 Nonsense Available for shipment Available now
sa17979 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa13401
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000128063 Nonsense 299 797 1 1
Genomic Location (Zv9):
Chromosome 14 (position 2990615)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 2043290
GRCz11 14 1961641
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGATGGCGTGTCAGATRTATTTCATATCARTWACAATGGACTGGTCACRT[T/A]AGTCGGTAARGTTGATTTTGAATCATTTAAGCACTACCAAATTGACATTG
Long Flanking Sequence:
AAGAGATGAGAGACGATTTGAGATTAGTGAATCTGCTGTCGTAGGGTCGAAATTCATGCTGGAGAAAGCGATAGACGCTGATATTGGCGCTAATGGTCTTCAGAGTTATTTCCTGCAGCCTACTGATCACTTTAATTTAAAGCTGCATGGTCAGAGTGATGGGAGTAAAAAGGTTGAAATGATTCTCCAGAAGCCTTTGGATCGAGAAAAGCAGGAAAACGTGTCTCTAATATTAACCGCGGTAGATGGCGGAGAGCCACCTAAATCAGGTACAGTTCAGATTCATATTACAGTGCTTGATGTGAATGATAATGCTCCAGTTTTTACCAAGCCTATATACAGGGCGATTATTACAGAGAATTCGCCGAGCGGCACGCCGCTCATTACTGTTAGCGCGTCTGATTCAGATAAAGGGGCACATGGAGAGGTCAGTTATTTAATTGCAAACAGTGATGGCGTGTCAGATGTATTTCATATCAATAACAATGGACTGGTCACGT[T/A]AGTCGGTAAGGTTGATTTTGAATCATTTAAGCACTACCAAATTGACATTGAAGCAGTAGACAATGGTGGATTGTCTGATTCTAGTAAAATAATGGTCGACGTGATTGATGTAAATGATAACGCACCTGTCATTACGGTAATGTCAAAATCTAATGCGTTACCGGAGAACTCGCCACAGAGTACTGTGATTGCTATCATCAGTGTGAATGACCCTGATTCTGACAGCAACGGACAGGTGCAGTGTCGTGTAAGCGAAGACATCCCTTTTACAATAAAATCTACGTCTAATGGATTTTATAGTATTGTCACTGATGGTGATTTAGATCGCGAGAGAGAGTCTGAGTATGACATCAGTGTGACGTGTGCTGATGAGGGCGTGCCCTCTCTCTCCAGCAGCGTCACTCTCTCCTTACAGATATCAGATGTGAATGATAACGCGCCTGTCTTTGAGCAGAGCTCATATCAGGCCTCTGTTCAGGAAAACAATACACCTGGTCTTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa17979
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000128063 Nonsense 376 797 1 1
Genomic Location (Zv9):
Chromosome 14 (position 2990845)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 2043060
GRCz11 14 1961411
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTACTGTGMTTGCWAKCATCAGTGTGAATGACCCTGAKTCTGACAGCAAC[G/T]GWCAGGTGCAGTGTCRTGTAAGCGAAGAMATCCCTTTTACAATMAAATCT
Long Flanking Sequence:
TATTAACCGCGGTAGATGGCGGAGAGCCACCTAAATCAGGTACAGTTCAGATTCATATTACAGTGCTTGATGTGAATGATAATGCTCCAGTTTTTACCAAGCCTATATACAGGGCGATTATTACAGAGAATTCGCCGAGCGGCACGCCGCTCATTACTGTTAGCGCGTCTGATTCAGATAAAGGGGCACATGGAGAGGTCAGTTATTTAATTGCAAACAGTGATGGCGTGTCAGATGTATTTCATATCAATAACAATGGACTGGTCACGTTAGTCGGTAAGGTTGATTTTGAATCATTTAAGCACTACCAAATTGACATTGAAGCAGTAGACAATGGTGGATTGTCTGATTCTAGTAAAATAATGGTCGACGTGATTGATGTAAATGATAACGCACCTGTCATTACGGTAATGTCAAAATCTAATGCGTTACCGGAGAACTCGCCACAGAGTACTGTGATTGCTATCATCAGTGTGAATGACCCTGATTCTGACAGCAAC[G/T]GACAGGTGCAGTGTCGTGTAAGCGAAGACATCCCTTTTACAATAAAATCTACGTCTAATGGATTTTATAGTATTGTCACTGATGGTGATTTAGATCGCGAGAGAGAGTCTGAGTATGACATCAGTGTGACGTGTGCTGATGAGGGCGTGCCCTCTCTCTCCAGCAGCGTCACTCTCTCCTTACAGATATCAGATGTGAATGATAACGCGCCTGTCTTTGAGCAGAGCTCATATCAGGCCTCTGTTCAGGAAAACAATACACCTGGTCTTTCCATATTCACAGTCAGAGCCAGAGACGCAGATTTTAACCAGAACGCCCGTGTGTCCTACATACTGGAGGACTCGTCGGTTAACGGAGTGCCCGTCTCCTCGTTAGTGTCCGTTAGTGCTGATAGTGGAGTCATACATGCAGTGCGATCTTTCGATTACGAGCAGATCAAAGAGTTCCAGTTCCGCGTAAAAGCGCAGGACGGAGGCTCTCCTCCTCTCAGCAGCAACGCG
Associated Phenotype:
Not determined