Busch Lab

ZMP

si:dkey-27i16.3

Ensembl ID:
ENSDARG00000057773
ZFIN ID:
ZDB-GENE-091204-115
Human Orthologue:
PCDH20
Human Description:
protocadherin 20 [Source:HGNC Symbol;Acc:14257]
Mouse Orthologue:
Pcdh20
Mouse Description:
protocadherin 20 Gene [Source:MGI Symbol;Acc:MGI:2443376]

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa11477 Nonsense Available for shipment Available now
sa22452 Nonsense Available for shipment Available now
sa13628 Nonsense Available for shipment Available now
sa31977 Nonsense Available for shipment Available now
sa35668 Nonsense Available for shipment Available now
sa13218 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa11477
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080527 Nonsense 77 833 2 2
Genomic Location (Zv9):
Chromosome 14 (position 18470209)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 14264662
GRCz11 14 14570225
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
ATAACAGGGGATCTGTTCACTAAAGAWCGCCYTGATAGAGAAACTTTGTG[T/A]CCATCACATCAGGATGGAGAATGTACTTTTTTAAATACTGCAGTCGTGAG
Long Flanking Sequence:
CATTTGGGAAGTATTTAAAAAAAGAAAAAAAAAATTGTTCAGTTAAATTTTGTCCCCTGTTCATAGAAAACATGCAGACATTTGCAAGCTTGGTTTAGATTATTCTAAAGTTACATTTCTGAGTGCTGGAACATGTAAGACTACATTTCAGCATGAGTAACAACACATGGGAGAAAAAAAAAACTCTGACTTGGTGGTTAAGGATTACACGCTTAACTCCTGAGTCTGGTTAAACTTTCATTTGGAAAGAAGGATGTCTGCCAGTAGTAAGTCTCTTCTCTTGTTTTGTAGTGGGTGCTTCTCTTGGCATGTGCTGGGCAAATCCATAGCCTTGCACTGCGTTTCAGCGTCCTGGAGGAGCAAGAAGCAGGCCTTAAAATTGGAACACTAAGTACAAACTACTCAGCTCCATACCGGCTTCTCAATGAAAGATACATCAGGGTGGATGAGATAACAGGGGATCTGTTCACTAAAGATCGCCTTGATAGAGAAACTTTGTG[T/A]CCATCACATCAGGATGGAGAATGTACTTTTTTAAATACTGCAGTCGTGAGCCCTCATTTGGACGTAGTTCCAATGGTAATTGTTGTGAATGATATTAATGACAATGCTCCTGTTTTCGAAAGGAATGAAATTCCTCTACGCATACCTGAAGATACGTCCATTGGGACTACTTTCCTGCTGGATGACCAAGCCCAGGATAAGGACACTGCAAATAATGGCTTGATACATTATCATTTAGAGGGATCTAATGGATTTTTTGGCATCAGACAAGAGGATTATGGACTCGAGCTCATAGTACAAAAGGAACTAGACCGAGAAACTCAGGATAACTACTTCTTAGTTCTTGTAGCAGTAGACAGAGGTTCAATGCCACTCAGCGCTACTGCTAATCTCAGTGTAACTGTAACCGATGTTGATGACAACTGCCCAGAATTTGATGATGATAGCCCCATCAAAGCCATTGTGCCAGGATTAGGAATCAAGGGCACTGCGGTGGCTCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22452
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080527 Nonsense 117 833 2 2
Genomic Location (Zv9):
Chromosome 14 (position 18470327)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 14264780
GRCz11 14 14570343
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TTCCAATGGTAATTGTTGTGAATGATATTAATGACAATGCTCCTGTTTTC[G/T]AAAGGAATGAAATTCCTCTACGCATACCTGAAGATACGTCCATTGGGACT
Long Flanking Sequence:
CTGAGTGCTGGAACATGTAAGACTACATTTCAGCATGAGTAACAACACATGGGAGAAAAAAAAAACTCTGACTTGGTGGTTAAGGATTACACGCTTAACTCCTGAGTCTGGTTAAACTTTCATTTGGAAAGAAGGATGTCTGCCAGTAGTAAGTCTCTTCTCTTGTTTTGTAGTGGGTGCTTCTCTTGGCATGTGCTGGGCAAATCCATAGCCTTGCACTGCGTTTCAGCGTCCTGGAGGAGCAAGAAGCAGGCCTTAAAATTGGAACACTAAGTACAAACTACTCAGCTCCATACCGGCTTCTCAATGAAAGATACATCAGGGTGGATGAGATAACAGGGGATCTGTTCACTAAAGATCGCCTTGATAGAGAAACTTTGTGTCCATCACATCAGGATGGAGAATGTACTTTTTTAAATACTGCAGTCGTGAGCCCTCATTTGGACGTAGTTCCAATGGTAATTGTTGTGAATGATATTAATGACAATGCTCCTGTTTTC[G/T]AAAGGAATGAAATTCCTCTACGCATACCTGAAGATACGTCCATTGGGACTACTTTCCTGCTGGATGACCAAGCCCAGGATAAGGACACTGCAAATAATGGCTTGATACATTATCATTTAGAGGGATCTAATGGATTTTTTGGCATCAGACAAGAGGATTATGGACTCGAGCTCATAGTACAAAAGGAACTAGACCGAGAAACTCAGGATAACTACTTCTTAGTTCTTGTAGCAGTAGACAGAGGTTCAATGCCACTCAGCGCTACTGCTAATCTCAGTGTAACTGTAACCGATGTTGATGACAACTGCCCAGAATTTGATGATGATAGCCCCATCAAAGCCATTGTGCCAGGATTAGGAATCAAGGGCACTGCGGTGGCTCAGCTTAAAGCAACAGACAAAGACCTGGGCCAAAATGCCCAGATCACATTTTCCTTCAGCCGTCAGATCTCAGACAGAGCCAAAACACTCTTTTACATGGACAGACACACAGGCCTGATC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13628
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080527 Nonsense 386 833 2 2
Genomic Location (Zv9):
Chromosome 14 (position 18471136)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 14265589
GRCz11 14 14571152
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTAGAAACAGACAGCATGCCATTTTCTTTGAAACAGCAAGCAGGCAGCTA[T/A]TTGCTTTCAACATCAAAAGCTCTAGAWTTTGAGCTGTGCGGCGAGTACGA
Long Flanking Sequence:
CCAGAATTTGATGATGATAGCCCCATCAAAGCCATTGTGCCAGGATTAGGAATCAAGGGCACTGCGGTGGCTCAGCTTAAAGCAACAGACAAAGACCTGGGCCAAAATGCCCAGATCACATTTTCCTTCAGCCGTCAGATCTCAGACAGAGCCAAAACACTCTTTTACATGGACAGACACACAGGCCTGATCAGCTTAGCAGTTGATGTGCACACTGACAGTCCTGAGGAGCACATGCTGAAAGTTTTTGCGAATGGTCCACTTTGCCCCCCTGCACAAGCTCAAGTAACTGTATACATTCAGCCCATGGTGAGCTCTGAGCCGACCATAAAGATCAGGTTTGTCACAGAGCATAAAAACCAAGTAATCATGTTACAAGAGAACGAACCCCCCACCGTCTTGGCCCTCTTGGAGTTGGAAGACACCTCTAGTGATAAAGGTACTCTGTCCTTAGAAACAGACAGCATGCCATTTTCTTTGAAACAGCAAGCAGGCAGCTA[T/A]TTGCTTTCAACATCAAAAGCTCTAGATTTTGAGCTGTGCGGCGAGTACGATGTTACAGTTGTTATTTCTGATCCTCATGGCGCACGCCTACATGGAAGGGAAGTGATCAAAGTGGTGGTTCAAGATCTGAATGATAATGCCCCAAAGTTTGAACAAACACGTTACGAAACAGACATCAAGGAGAACAACAAGCCTGGAGAGTTTCTGCTGAAGGTACAGGCTACTGATGCAGATAGCCATCAGTTTGGCAAAGTAGAGTATAGGATTACAAACGGGAGTCCTTTCAGAATTCAGGAAGAGACAGGTGTGATATTGGTCACAGAGCCTTTAGATAGAGAACAGCAGGGGACATACATCCTGACTGTTCTTGCCCAGGACGGCGGCGATCCTTCTCAGGAGGCCTTTGCTATTGTGTTTGTAAATGTACTGGATATGAACGACAATCCACCAGCCTTTCCAACCCCTCATTTCTATTTTTTTGTGTCTGAGAGCCTTCCGCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31977
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080527 Nonsense 438 833 2 2
Genomic Location (Zv9):
Chromosome 14 (position 18471290)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 14265743
GRCz11 14 14571306
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGATCAAAGTGGTGGTTCAAGATCTGAATGATAATGCCCCAAAGTTTGAA[C/T]AAACACGTTACGAAACAGACATCAAGGAGAACAACAAGCCTGGAGAGTTT
Long Flanking Sequence:
AAACACTCTTTTACATGGACAGACACACAGGCCTGATCAGCTTAGCAGTTGATGTGCACACTGACAGTCCTGAGGAGCACATGCTGAAAGTTTTTGCGAATGGTCCACTTTGCCCCCCTGCACAAGCTCAAGTAACTGTATACATTCAGCCCATGGTGAGCTCTGAGCCGACCATAAAGATCAGGTTTGTCACAGAGCATAAAAACCAAGTAATCATGTTACAAGAGAACGAACCCCCCACCGTCTTGGCCCTCTTGGAGTTGGAAGACACCTCTAGTGATAAAGGTACTCTGTCCTTAGAAACAGACAGCATGCCATTTTCTTTGAAACAGCAAGCAGGCAGCTATTTGCTTTCAACATCAAAAGCTCTAGATTTTGAGCTGTGCGGCGAGTACGATGTTACAGTTGTTATTTCTGATCCTCATGGCGCACGCCTACATGGAAGGGAAGTGATCAAAGTGGTGGTTCAAGATCTGAATGATAATGCCCCAAAGTTTGAA[C/T]AAACACGTTACGAAACAGACATCAAGGAGAACAACAAGCCTGGAGAGTTTCTGCTGAAGGTACAGGCTACTGATGCAGATAGCCATCAGTTTGGCAAAGTAGAGTATAGGATTACAAACGGGAGTCCTTTCAGAATTCAGGAAGAGACAGGTGTGATATTGGTCACAGAGCCTTTAGATAGAGAACAGCAGGGGACATACATCCTGACTGTTCTTGCCCAGGACGGCGGCGATCCTTCTCAGGAGGCCTTTGCTATTGTGTTTGTAAATGTACTGGATATGAACGACAATCCACCAGCCTTTCCAACCCCTCATTTCTATTTTTTTGTGTCTGAGAGCCTTCCGCATCTTTCTCAAGTCGGTAAAGTCACAGTAAGTGATGCTGATGACGGAGACAATGGAAGAATAGTGGATTTGCGTATATTAAATGACAAGGCCCCTTTCGTCATAGACATGTCACAAGGGATGCTCCGCAGTACTGGTGAAGTCGACCGTGAGAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa35668
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080527 Nonsense 452 833 2 2
Genomic Location (Zv9):
Chromosome 14 (position 18471332)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 14265785
GRCz11 14 14571348
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGTTTGAACAAACACGTTACGAAACAGACATCAAGGAGAACAACAAGCCT[G/T]GAGAGTTTCTGCTGAAGGTACAGGCTACTGATGCAGATAGCCATCAGTTT
Long Flanking Sequence:
TAGCAGTTGATGTGCACACTGACAGTCCTGAGGAGCACATGCTGAAAGTTTTTGCGAATGGTCCACTTTGCCCCCCTGCACAAGCTCAAGTAACTGTATACATTCAGCCCATGGTGAGCTCTGAGCCGACCATAAAGATCAGGTTTGTCACAGAGCATAAAAACCAAGTAATCATGTTACAAGAGAACGAACCCCCCACCGTCTTGGCCCTCTTGGAGTTGGAAGACACCTCTAGTGATAAAGGTACTCTGTCCTTAGAAACAGACAGCATGCCATTTTCTTTGAAACAGCAAGCAGGCAGCTATTTGCTTTCAACATCAAAAGCTCTAGATTTTGAGCTGTGCGGCGAGTACGATGTTACAGTTGTTATTTCTGATCCTCATGGCGCACGCCTACATGGAAGGGAAGTGATCAAAGTGGTGGTTCAAGATCTGAATGATAATGCCCCAAAGTTTGAACAAACACGTTACGAAACAGACATCAAGGAGAACAACAAGCCT[G/T]GAGAGTTTCTGCTGAAGGTACAGGCTACTGATGCAGATAGCCATCAGTTTGGCAAAGTAGAGTATAGGATTACAAACGGGAGTCCTTTCAGAATTCAGGAAGAGACAGGTGTGATATTGGTCACAGAGCCTTTAGATAGAGAACAGCAGGGGACATACATCCTGACTGTTCTTGCCCAGGACGGCGGCGATCCTTCTCAGGAGGCCTTTGCTATTGTGTTTGTAAATGTACTGGATATGAACGACAATCCACCAGCCTTTCCAACCCCTCATTTCTATTTTTTTGTGTCTGAGAGCCTTCCGCATCTTTCTCAAGTCGGTAAAGTCACAGTAAGTGATGCTGATGACGGAGACAATGGAAGAATAGTGGATTTGCGTATATTAAATGACAAGGCCCCTTTCGTCATAGACATGTCACAAGGGATGCTCCGCAGTACTGGTGAAGTCGACCGTGAGAAGCAAGATCGCTATGAGCTTTTGGTTGTCGCTGTAGATGGTGGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13218
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000080527 Nonsense 459 833 2 2
Genomic Location (Zv9):
Chromosome 14 (position 18471353)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 14265806
GRCz11 14 14571369
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AAACAGACATCAAGGAGAACAACAAGCCTGGAGAGTTTCTGCTGAAGGTA[C/T]AGGCTACTGATGCAGATAGCCATCAGTTTGGCAAAGTAGAGTATAGGATT
Long Flanking Sequence:
ACAGTCCTGAGGAGCACATGCTGAAAGTTTTTGCGAATGGTCCACTTTGCCCCCCTGCACAAGCTCAAGTAACTGTATACATTCAGCCCATGGTGAGCTCTGAGCCGACCATAAAGATCAGGTTTGTCACAGAGCATAAAAACCAAGTAATCATGTTACAAGAGAACGAACCCCCCACCGTCTTGGCCCTCTTGGAGTTGGAAGACACCTCTAGTGATAAAGGTACTCTGTCCTTAGAAACAGACAGCATGCCATTTTCTTTGAAACAGCAAGCAGGCAGCTATTTGCTTTCAACATCAAAAGCTCTAGATTTTGAGCTGTGCGGCGAGTACGATGTTACAGTTGTTATTTCTGATCCTCATGGCGCACGCCTACATGGAAGGGAAGTGATCAAAGTGGTGGTTCAAGATCTGAATGATAATGCCCCAAAGTTTGAACAAACACGTTACGAAACAGACATCAAGGAGAACAACAAGCCTGGAGAGTTTCTGCTGAAGGTA[C/T]AGGCTACTGATGCAGATAGCCATCAGTTTGGCAAAGTAGAGTATAGGATTACAAACGGGAGTCCTTTCAGAATTCAGGAAGAGACAGGTGTGATATTGGTCACAGAGCCTTTAGATAGAGAACAGCAGGGGACATACATCCTGACTGTTCTTGCCCAGGACGGCGGCGATCCTTCTCAGGAGGCCTTTGCTATTGTGTTTGTAAATGTACTGGATATGAACGACAATCCACCAGCCTTTCCAACCCCTCATTTCTATTTTTTTGTGTCTGAGAGCCTTCCGCATCTTTCTCAAGTCGGTAAAGTCACAGTAAGTGATGCTGATGACGGAGACAATGGAAGAATAGTGGATTTGCGTATATTAAATGACAAGGCCCCTTTCGTCATAGACATGTCACAAGGGATGCTCCGCAGTACTGGTGAAGTCGACCGTGAGAAGCAAGATCGCTATGAGCTTTTGGTTGTCGCTGTAGATGGTGGCAGTCCAGTCCTCTCCACTACT
Associated Phenotype:
Not determined