ZMP
sdf2
Ensembl ID:
ZFIN ID:
Description:
stromal cell-derived factor 2 [Source:RefSeq peptide;Acc:NP_956333]
Human Orthologue:
SDF2
Human Description:
stromal cell-derived factor 2 [Source:HGNC Symbol;Acc:10675]
Mouse Orthologue:
Sdf2
Mouse Description:
stromal cell derived factor 2 Gene [Source:MGI Symbol;Acc:MGI:108019]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa43657 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa132 | Nonsense | F2 line generated | Not yet available |
Mutation Details
Allele Name:
sa43657
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034875 | Essential Splice Site | 59 | 222 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 21 (position 25419781)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 21 | 25989599 |
| GRCz11 | 21 | 26026294 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTTCACATAAATTAATTAATATAAATGTGTTATTATGATTTTGTAATTGC[A/T]GGTAGTGGTCAGCAGTCAGTGACAGGTGTGACCACAGTGGAGGACAGTAA
Long Flanking Sequence:
GGACTGATCACCCCAGTGAATCTAATTTAATAGATTAGTAGATATTTTCCAAATAGACCTATTTAAATCAACAGGTGAAATTATATTCATATTGCAATATATATTGCATCAAAGCAAAATATCGCAATGTTTCAATACCGTGCACCTCTGGCCTACAATGCATAATCGCTTGCAAAAAAAAATTGAAAACATACAGTGGACAACTGCAGAAAATGAGAAAACAGCAAGGAAACATTTACATCCTTCTTTTCCTAACATCATTGTCAGGTTGCAATTCTGAAGAAATCCATATTCTAACTTATTTTCTTATTGGGCTAGTAATGGAAACACAAAAAAGCAGTTATTGGCTGATTGATAAACCGATATGGTCACTGATGTATTAATCATCTCTAATAGAATTCTTCTATAATAAAGTAAAATTCTGTTTTTAATTGCCTTAATGCATCCTTGCTTCACATAAATTAATTAATATAAATGTGTTATTATGATTTTGTAATTGC[A/T]GGTAGTGGTCAGCAGTCAGTGACAGGTGTGACCACAGTGGAGGACAGTAACAGTTACTGGAGTGTTCGGGGCACCAGTGATCACTCATGTCATCGAGGGACTCCTGTACGTTGTGGACAAAATATCCGACTGACCCATGTGAACACAGGCCGCAATCTACACAGCCACTACTTCACCTCTCCGCTTTCTTCAAATCAGGTTTTAATATCTCCATTAACACATATCTAAATCAAATATTTATATGTGAAGCACTGTATGAAAAGCTACATAAGTATTGCATTACATAAGTTGTCATTAGTCAGTCATGAACATGATTGTCGTGAGGCCTTTAAAATTGTATCATGAATATTTTCCTGATTAAATCTTTCTTTTTTATAACAGTTTTTTAAAATACAAATATGTCAAAATAATTTTTAATAGTGCCAGTAATGGGCTAATGACAGATGATTACAGTTGCCATAAATGAAACTCTCTGTGTTTGATTTTCTTTTTTATACACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa132
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000034875 | Nonsense | 90 | 222 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 21 (position 25419687)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 21 | 25989505 |
| GRCz11 | 21 | 26026200 |
KASP Assay ID:
554-0862.1 (used for ordering genotyping assays)
KASP Sequence:
ACAGTAACAGTTACTGGAGTGTTCGGGGCACCAGTGATCACTCATGTCAT[C/T]GAGGGACTCCTGTACGTTGTGGACAAAATATCCGACTGACCCATGTGAAC
Long Flanking Sequence:
CAATATATATTGCATCAAAGCAAAATATCGCAATGTTTCAATACCGTGCACCTCTGGCCTACAATGCATAATCGCTTGCAAAAAAAAATTGAAAACATACAGTGGACAACTGCAGAAAATGAGAAAACAGCAAGGAAACATTTACATCCTTCTTTTCCTAACATCATTGTCAGGTTGCAATTCTGAAGAAATCCATATTCTAACTTATTTTCTTATTGGGCTAGTAATGGAAACACAAAAAAGCAGTTATTGGCTGATTGATAAACCGATATGGTCACTGATGTATTAATCATCTCTAATAGAATTCTTCTATAATAAAGTAAAATTCTGTTTTTAATTGCCTTAATGCATCCTTGCTTCACATAAATTAATTAATATAAATGTGTTATTATGATTTTGTAATTGCAGGTAGTGGTCAGCAGTCAGTGACAGGTGTGACCACAGTGGAGGACAGTAACAGTTACTGGAGTGTTCGGGGCACCAGTGATCACTCATGTCAT[C/T]GAGGGACTCCTGTACGTTGTGGACAAAATATCCGACTGACCCATGTGAACACAGGCCGCAATCTACACAGCCACTACTTCACCTCTCCGCTTTCTTCAAATCAGGTTTTAATATCTCCATTAACACATATCTAAATCAAATATTTATATGTGAAGCACTGTATGAAAAGCTACATAAGTATTGCATTACATAAGTTGTCATTAGTCAGTCATGAACATGATTGTCGTGAGGCCTTTAAAATTGTATCATGAATATTTTCCTGATTAAATCTTTCTTTTTTATAACAGTTTTTTAAAATACAAATATGTCAAAATAATTTTTAATAGTGCCAGTAATGGGCTAATGACAGATGATTACAGTTGCCATAAATGAAACTCTCTGTGTTTGATTTTCTTTTTTATACACACACGATTATGCTGTCGAGCTGTTGTATAAATGCAATGTCACACTCATAGCAGTGCTATATGGCTGTCTAACGCCTCGTTCACATGGGGCTTCAG
Associated Phenotype:
Not determined