Busch Lab

ZMP

nr1d4a

Ensembl ID:
ENSDARG00000031161
ZFIN ID:
ZDB-GENE-080403-5
Description:
Novel protein similar to H.sapeins NR1D2, nuclear receptor subfamily 1, group D, member 2 (NR1D2) [S
Human Orthologues:
NR1D1, NR1D2
Human Descriptions:
nuclear receptor subfamily 1, group D, member 1 [Source:HGNC Symbol;Acc:7962]
nuclear receptor subfamily 1, group D, member 2 [Source:HGNC Symbol;Acc:7963]
Mouse Orthologues:
Nr1d1, Nr1d2
Mouse Descriptions:
nuclear receptor subfamily 1, group D, member 1 Gene [Source:MGI Symbol;Acc:MGI:2444210]
nuclear receptor subfamily 1, group D, member 2 Gene [Source:MGI Symbol;Acc:MGI:2449205]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa44031 Nonsense Mutation detected in F1 DNA Not yet available
sa31092 Nonsense Mutation detected in F1 DNA Not yet available
sa1310 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa44031
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103169 Nonsense 122 570 3 8
ENSDART00000103169 Nonsense 122 570 3 8
Genomic Location (Zv9):
Chromosome 23 (position 35861038)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 35710691
GRCz11 23 35809494
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAGACGGGAGGCATGGTGCTCCTTTGTAAAGTATGTGGAGATATTGCAT[C/A]AGGGTTCCACTATGGTGTCCATGCATGTGAAGGCTGCAAGGTAAGACAGA
Long Flanking Sequence:
GGAGCGTGATTCTCTACGCTGGTTCCAGTGGCAGTTCCAGTCCAAGTCCAGGAAGCCCTTCAAGTGGTTATCAAACCCAGTCTCCATCCTCTCACTCCCAGCCTTCTTCCCCAGAGGAGGTGACCTTCACCGAGATCGGGGCCTTCAAGCAGCAGGGAAATGCTGGATCACCAAATTCTCCAAAACTGGTCTTTCAGTTCCCTGAAATCTACAACAACTCCACAGCAGGTCCAAACCCGCACAGCTACTCCCACCCTATCGCCGGTAAAAGGCCTTGTGGATTCACTGGCACATTTACCAGTAAGTGGGTTCCCTACTTAGCATCTGAAACACACAAAGTCAGCATCTTCTTTCACCAAGGAACAACGAGTCCCTAATATTAAGGGCATCTTCCGGTGTTCTTTGTACGTCCTGACCCTGTTTTTGCTCTGTTTCTATCTTTATCCGAGCAGAGACGGGAGGCATGGTGCTCCTTTGTAAAGTATGTGGAGATATTGCAT[C/A]AGGGTTCCACTATGGTGTCCATGCATGTGAAGGCTGCAAGGTAAGACAGAACTTCTACTATTAATAAATACTAAATAATTTACTTTTAACAATAAAAATGTTGCAACAATGCCAAGATTAGTTTTGGTTGCCCACTGAACATTTAGGTGACCTGTTCTTATACAAGAACCTTTTTTTCTGTGCGGTGTGGTCACTTTCACTGTAACATGCCAAAAGTACAAAAGCAGAATCCAGTCATTTCAATAGAAAACTGCATGAGTTTCACAAGAGGCCGAAAAAGCTTCTCAAGCTCAAATGTTTCTCAAGTTGGTCATGCAAATCAATCACTGATTGGTTCAACTGAGTTTCTTATGGGCATTTGCTAAAGACATTGGTTTGCCATAAACAAGAGACTATAGACCTATTTTGTTATAAAAACAAAAACTTAGGCTGCATTTACACTGCAAATTTTGATGGTCAATTCCAATTTTTTTGCTGACCTGCTTACATCATCTTTTAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa31092
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103169 Nonsense 122 570 3 8
ENSDART00000103169 Nonsense 122 570 3 8
Genomic Location (Zv9):
Chromosome 23 (position 35861038)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 35710691
GRCz11 23 35809494
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGAGACGGGAGGCATGGTGCTCCTTTGTAAAGTATGTGGAGATATTGCAT[C/A]AGGGTTCCACTATGGTGTCCATGCATGTGAAGGCTGCAAGGTAAGACAGA
Long Flanking Sequence:
GGAGCGTGATTCTCTACGCTGGTTCCAGTGGCAGTTCCAGTCCAAGTCCAGGAAGCCCTTCAAGTGGTTATCAAACCCAGTCTCCATCCTCTCACTCCCAGCCTTCTTCCCCAGAGGAGGTGACCTTCACCGAGATCGGGGCCTTCAAGCAGCAGGGAAATGCTGGATCACCAAATTCTCCAAAACTGGTCTTTCAGTTCCCTGAAATCTACAACAACTCCACAGCAGGTCCAAACCCGCACAGCTACTCCCACCCTATCGCCGGTAAAAGGCCTTGTGGATTCACTGGCACATTTACCAGTAAGTGGGTTCCCTACTTAGCATCTGAAACACACAAAGTCAGCATCTTCTTTCACCAAGGAACAACGAGTCCCTAATATTAAGGGCATCTTCCGGTGTTCTTTGTACGTCCTGACCCTGTTTTTGCTCTGTTTCTATCTTTATCCGAGCAGAGACGGGAGGCATGGTGCTCCTTTGTAAAGTATGTGGAGATATTGCAT[C/A]AGGGTTCCACTATGGTGTCCATGCATGTGAAGGCTGCAAGGTAAGACAGAACTTCTACTATTAATAAATACTAAATAATTTACTTTTAACAATAAAAATGTTGCAACAATGCCAAGATTAGTTTTGGTTGCCCACTGAACATTTAGGTGACCTGTTCTTATACAAGAACCTTTTTTTCTGTGCGGTGTGGTCACTTTCACTGTAACATGCCAAAAGTACAAAAGCAGAATCCAGTCATTTCAATAGAAAACTGCATGAGTTTCACAAGAGGCCGAAAAAGCTTCTCAAGCTCAAATGTTTCTCAAGTTGGTCATGCAAATCAATCACTGATTGGTTCAACTGAGTTTCTTATGGGCATTTGCTAAAGACATTGGTTTGCCATAAACAAGAGACTATAGACCTATTTTGTTATAAAAACAAAAACTTAGGCTGCATTTACACTGCAAATTTTGATGGTCAATTCCAATTTTTTTGCTGACCTGCTTACATCATCTTTTAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1310
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103169 Nonsense 514 570 8 8
Genomic Location (Zv9):
Chromosome 23 (position 35847475)
Other Location(s):
Assembly Chromosome Position
GRCz10 23 35697128
GRCz11 23 35795931
KASP Assay ID:
554-1225.1 (used for ordering genotyping assays)
KASP Sequence:
ATAAACACTTTTGTGTCTATCCACAGATTGCTCTGGCATTTCGGATATGT[T/A]GGCGGTTGAACAGCTCCAGGAAGGACTCATCCGAGCTCTGCGCACTTTAA
Long Flanking Sequence:
TCTATTATAGGTGTGAGAGTCAGTATGATTAAAAAACACTTACTCCTACTACCTACTACTATTTACTATAAACTACTGTAGTATATATTCATGGGGGTGTCTGACAACTGAAAAAAGATCTGGTAGCAGATATCACAGTTTCTGTTACTTTTTACCTTGCACTTTTGTTAGCACTTATTATTTATTTAGAATATATGATTTCACATTCAGATTCCAGTGTCTAATTATTAAATTGTACTTGCACTGTGATGATATTATATTTTCATTCTGGCATTATATAATGAGTGGCTTAAAATGGTCTTAAAATGACAACAATATTGTTCATCACTATATTTTGGTGCAATATATCGTAAAAAAAACAAAATAGATATCGTGTCAGGCCTTTACATATAACAATAACAAGATGACCCAAAATATGCTTCAACTTACATTTATTTCATTATTATTACTATAAACACTTTTGTGTCTATCCACAGATTGCTCTGGCATTTCGGATATGT[T/A]GGCGGTTGAACAGCTCCAGGAAGGACTCATCCGAGCTCTGCGCACTTTAATCAACCGTCGACACCCCGACGACAACTCGCTCTTTTCTAAACTTCTCCTGCGCCTCCCAGACCTGCGCACCCTCAACAACCTCCACTCCGACAAGCTGCTGGCCTTCCGCATTGACCCATAAACTATCAGTCCCAACAGCCAGAAACCACCCAAAGGCCACAACAAGCCATTCAGAGAAAACCCTTCCCAGAAAGACTGCTCGTTTACAGGGAGATGTTGAGCAGGTTCCCTTAGGAACCAGACATTACGATGCGTGTTAATGAGGAACACAATGAACAGATGCTCTCAGCACGCTCTAAACGAGACATTTAAGCTTTCATGGATCATTTTCACACATGCATTGCTCTTATGTTTGCCTCGAGATTATATTTATCTGAGGATAAGTTTTGCCAGTCATATCATCATAAATAAGCTTACTGCAACTTTTAAAGACCAAAAAAAAAAAAAAA
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461