ZMP
lhx1b
Ensembl ID:
ZFIN ID:
Description:
LIM homeobox 1b [Source:RefSeq peptide;Acc:NP_571282]
Human Orthologue:
LHX1
Human Description:
LIM homeobox 1 [Source:HGNC Symbol;Acc:6593]
Mouse Orthologue:
Lhx1
Mouse Description:
LIM homeobox protein 1 Gene [Source:MGI Symbol;Acc:MGI:99783]
Alleles
There are 3 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa129 | Nonsense | F2 line generated | Not yet available |
| sa33723 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa17709 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa129
Status:
F2 line generated
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000021159 | Nonsense | 110 | 402 | 2 | 5 |
Genomic Location (Zv9):
Chromosome 5 (position 57680078)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 55600677 |
| GRCz11 | 5 | 56270894 |
KASP Assay ID:
554-0973.1 (used for ordering genotyping assays)
KASP Sequence:
TGCAATAAACAGCTTTCCACCGGCGAAGAACTGTACATCCTAGATGAATA[T/A]AAATTTGTCTGCAAGGAGGATTACTTGAATAACAGCAATGGAAAAGACAC
Long Flanking Sequence:
GTAATATTCTAACATTTAATGACATAGACATGTGCAGCAAGTCTCAAAATTGACTGCAATAATACAGTCACCATTGGGTCTGACAATTACAAACATTTTGATATGCATATAATGCAGGCATTTTGACATTAGGAATCAATTGAGCTATTTTTTAAGTAGAAACGGACGTGGTAAAACGTTTTTCATGAAAAAAAAAATGCTGTTAAATTGTTCTTGTTTAAATTTCCGTAACCCTTTGGTTTGTGTTCTCTGGCATGTTTGATATTCCCTTTCACGTTCTATGACTACAATATTATCTCAATGACTACAATTATGTTTTTGTTGTTGTTTTTTCATGTCAGACGTTATGGCACTAAATGTGGAGGCTGCGCGCAGGGAATCTCGCCCAGTGATCTCGTTCGGAAAGCGCGAAGCAAAGTCTTTCACTTGAACTGTTTCACCTGCATTATGTGCAATAAACAGCTTTCCACCGGCGAAGAACTGTACATCCTAGATGAATA[T/A]AAATTTGTCTGCAAGGAGGATTACTTGAATAACAGCAATGGAAAAGACACAAACCTTCTGTCAAGTAAGTCGGTGATTTTGGGCCTTGTGGGCCTACATGAGATAAAATATTTACATTAGACACATGAGGATACAATCAAGAGTATTAGTTTTTCCCATCTCCGTGTTCGTTAACTGCAGGCAATTGGCGGGTCTTTATGAAAATATATGACACTATTTATTAAAATGTATTAGTGATACAAAATGCGTTGTCTGTGTAGAATGGCATTGCATTTCGATAGACAATAGGCCTACATGATAATTTACGCATGATATTTAAGTGGCCTACATAACAGCTTCTAAATGTGCTTTTTTACAGTTACCACCTGCAGTGACCCGAGCTTATCTCCAGAGTCTCAAGACCCACAGGATGATTACAAAGACTCTGAGAGTGGACCCATGTCAGACAAGGAGACCTGCAACAATGAAAATGACGAACAGAATCTGGGTGGCAAACGTCG
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa33723
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000021159 | Essential Splice Site | 131 | 402 | 2 | 5 |
Genomic Location (Zv9):
Chromosome 5 (position 57680143)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 55600742 |
| GRCz11 | 5 | 56270959 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGAGGATTACTTGAATAACAGCAATGGAAAAGACACAAACCTTCTGTCAA[G/A]TAAGTCGGTGATTTTGGGCCTTGTGGGCCTACATGAGATAAAATATTTAC
Long Flanking Sequence:
AGTCACCATTGGGTCTGACAATTACAAACATTTTGATATGCATATAATGCAGGCATTTTGACATTAGGAATCAATTGAGCTATTTTTTAAGTAGAAACGGACGTGGTAAAACGTTTTTCATGAAAAAAAAAATGCTGTTAAATTGTTCTTGTTTAAATTTCCGTAACCCTTTGGTTTGTGTTCTCTGGCATGTTTGATATTCCCTTTCACGTTCTATGACTACAATATTATCTCAATGACTACAATTATGTTTTTGTTGTTGTTTTTTCATGTCAGACGTTATGGCACTAAATGTGGAGGCTGCGCGCAGGGAATCTCGCCCAGTGATCTCGTTCGGAAAGCGCGAAGCAAAGTCTTTCACTTGAACTGTTTCACCTGCATTATGTGCAATAAACAGCTTTCCACCGGCGAAGAACTGTACATCCTAGATGAATATAAATTTGTCTGCAAGGAGGATTACTTGAATAACAGCAATGGAAAAGACACAAACCTTCTGTCAA[G/A]TAAGTCGGTGATTTTGGGCCTTGTGGGCCTACATGAGATAAAATATTTACATTAGACACATGAGGATACAATCAAGAGTATTAGTTTTTCCCATCTCCGTGTTCGTTAACTGCAGGCAATTGGCGGGTCTTTATGAAAATATATGACACTATTTATTAAAATGTATTAGTGATACAAAATGCGTTGTCTGTGTAGAATGGCATTGCATTTCGATAGACAATAGGCCTACATGATAATTTACGCATGATATTTAAGTGGCCTACATAACAGCTTCTAAATGTGCTTTTTTACAGTTACCACCTGCAGTGACCCGAGCTTATCTCCAGAGTCTCAAGACCCACAGGATGATTACAAAGACTCTGAGAGTGGACCCATGTCAGACAAGGAGACCTGCAACAATGAAAATGACGAACAGAATCTGGGTGGCAAACGTCGCGGGCCTCGAACTACAATCAAAGCCAAGCAGCTGGAGACACTGAAAGCTGCTTTCGCCGCCACCC
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa17709
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000021159 | Nonsense | 391 | 402 | 5 | 5 |
Genomic Location (Zv9):
Chromosome 5 (position 57682901)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 55603500 |
| GRCz11 | 5 | 56273717 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTCCACCCTTCACATCCCTGAACTCGCTCAGTGCCAACGGATACAGCAAT[C/T]AACTGTCCTCAGAGATGAAYGAGGGGACCGTCTGGTAGCAAAAAGGCAGA
Long Flanking Sequence:
GCTCTGTTAAGCAGGCCTATAGTGATGTTTAGTATTTACTTTTCATCCATTCTGCTCAACAAATTCAAGACAATCATACTGACAATTTATAAATTATGTGGGAGGATATAGGGAAGTCTTATCCTATTTAATGACTATTTGATGACCACTTTCTATCCTATACAGACTATCAAAGTGAATACTATGGCCCGGGGTCAAACTATGACTACTTCCCTCAGGGTCCACCGTCATCCCAAGCCCATACTCCAGGTGATCTAGGATTCATGCCCTCTTCTGGCCCAGCTGGAACGCCTCTAGGGAACATGGACCCCCATCACGGAGCACACCACCCCTCCAATGACACACAATGCTTTAGTGAGATGATATCACATCACCCTGGGGACTCTCCTAGTCCAGAGCCCAGCGCACCAGCCTCCATCCACAGCATCTCCACTGACATGTGTGACTCCACTCCACCCTTCACATCCCTGAACTCGCTCAGTGCCAACGGATACAGCAAT[C/T]AACTGTCCTCAGAGATGAACGAGGGGACCGTCTGGTAGCAAAAAGGCAGACTTATTCAGGACAAAAACATGTGGATATGTACTATTCATCTGTGATTTTTTTATAACAATGGTATTTCTATCTAGGTAATTTATTGATATAACTGTCTATTTATTCGTTCATTTGGTTACTATTTATTTATTTATTTATATATATATTTAAGCGACAATTGTGTATTTTGAAAGTGGAATGTCAAATGTGGGTCTGCAGACCTTATAGCTGTGCTATAGACAACGACAGTTTAAAAAAAGCTGAAACAGAATGTTTATATTTACAACACCTGGTGTGTCTGTTCACATGTGTATCATAACCTGACCTCTTTGCCTTTTAAGGCTTTGCCATAATGACACTTGAAATCATCTCACACCAAAAGTTTTCTTTGCTCTCCACACTCTTAAAAATAAAGGTTCCAAAAAGAGGTGCTGTGCAGCAATAGGAATAGTGTGATTAAACAAAACAAT
Associated Phenotype:
Not determined