ZMP

cxcl12a

Ensembl ID:

ENSDARG00000037116

ZFIN ID:

ZDB-GENE-030318-1

Description:

chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1) [Source:RefSeq peptide;Acc:NP_84

Human Orthologue:

CXCL12

Human Description:

chemokine (C-X-C motif) ligand 12 [Source:HGNC Symbol;Acc:10672]

Mouse Orthologue:

Cxcl12

Mouse Description:

chemokine (C-X-C motif) ligand 12 Gene [Source:MGI Symbol;Acc:MGI:103556]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa35516	Essential Splice Site	Mutation detected in F1 DNA	Not yet available
sa12849	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa35516

Status:

Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Not yet available

Mutation:

T > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000053946	Essential Splice Site	23	99	1	4

Genomic Location (Zv9):

Chromosome 13 (position 31028134)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	30674082
GRCz11	13	30804532

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

None

Flanking Sequence:

GTAGTAGTCGCTCTGATGGCGGTCGCCATTCATGCACCGATTTCCAACGG[T/A]AAGTTAATGTTATGCAAATGTTTACGTTGTTTTTGCATTGTGCGTAAAGC

Long Flanking Sequence:

GATGCAATAAAACTATAGATATGTGACATTTATAAGCATCTTTTGCTTATATTTTTTCTCATACATTGCTTATATGATATTTATAATATAGTTTTAAATGCCTGTGCATGTCTTGGGTTCATTTATATTACCAATAATCATCACAAAACATGAAATATCACCAATATTTAATAAATTGTGGATTAAAAATAACTGTTTCATAAACGTTAGCACTTTTATTTAGTGCCAAAAATGTAATAATAGAGGATATTTGTAGTGCCAATAGCTGACAAATCATCGTGGGAACACCCACTTTCTCCTTTTGAAGGTGGGGGACTAGAGGGGGTGTTTGGACCGGAGCCTGTTCGCAAATTTAACTCCGAGGCGCAGTTGCTGCTGTCACAGTTGCTCCTGGATTCTACACAGTGCGGATCTCTTCTTCACACTGCAAACATGGATCTCAAAGTGATCGTAGTAGTCGCTCTGATGGCGGTCGCCATTCATGCACCGATTTCCAACGG[T/A]AAGTTAATGTTATGCAAATGTTTACGTTGTTTTTGCATTGTGCGTAAAGCTTTAATGCACGTTTTGGCACACTTTATGGTGATGTTGCAATCCCGCTCATTAAAATCAATCAATGCAATTGGTGCAAACTTCAAAACAGACCTATTATTTTTTACGGCTTAAATGTGCATCTGTTTAAAAACAGAACATATATAGCTAATAGCGGTTGCGAATTTATTAAACAAAATCGCTGTATTTATTAGTAATGCATACCTTACGCATCATTGGTTTGTTTTTATTGAATCACTAAAATATTATATCCTTATATATCATATTCAAAATCCTTTCATTTTTAATTTTACCTTCATGGGTGCACTTTCCTTAATCGTCAGTGCATCATCCTGACACGCATTCGCTCAGGAGAGCCGAGAAGCCACTGTCACGGCGTTGATTAATGTGTGTATTTGTCGCCCTCCTTGTTTTCTCTTAATTACCCACAAATTAGAGGATAAAACAAAACC

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa12849

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000053946	Nonsense	34	99	2	4

Genomic Location (Zv9):

Chromosome 13 (position 31030203)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	13	30676151
GRCz11	13	30806601

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

CTTAATTCTTCTCCAGCCAAGCCCATCAGCCTGGTAGAGAGATGCTGGTG[C/A]CGTTCCACAGTCAACACAGTCCCACAGAGAAGCATTCGCGAGCTCAAGTT

Long Flanking Sequence:

ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATACATATATTTTACAATACAATACTCACTGATATCCCCAATAATATCTAAATTTATCATAATATAACTTCTAATCTTGATGTCAGAAGTTTCAGTTTCCATAGAGGACCTATGCCTCAGCCTCTCTGAAAACTGTGCTGGTTGTTATTAAAGAGTGTTGCAATAGTGAGTTTGGAGCACAGATCTATTACATAATAGATTTCGAAAATTTGACCCAAAAGTTTCATTTTTAGTCAAGGATGCTGTTCCGTTTTACAGCACACATCTGTGGTGTGATTAAACATGATTATTTGTATTTATGGCCCTTCTCATTATTCCATCCAACGTTCACATGCACTGAATTAAAAGCATCAAGGAAACAGCTGAACTGAGTTTCTCTTAATTCTTCTCCAGCCAAGCCCATCAGCCTGGTAGAGAGATGCTGGTG[C/A]CGTTCCACAGTCAACACAGTCCCACAGAGAAGCATTCGCGAGCTCAAGTTCCTCCACACACCCAACTGCCCCTTCCAAGTCATGTGAGTATCTGCACTTTCCTTCTCGCTCAGCAGCTCTTAACAGCGCATCACCTCACCCCATCAATCTCCAAACACTGAATGGGCCAGGAATTGGCATTATACTGTCGGACAGGCTCTCACAATTACACACATCCAAGAAATGCTATGGGAGGGGGTAGGAGCTTTAAGCATGGATGCATTTGTATTTTGTACAGGAAACCAGCAAAATGAGGTCCAAAAGATTCTTCTTTCTCACACATGTAAAGGAATTGTGCTTAGTCAGACACACACACAAATGAAGCATTGATGTTACTTTATGTAATTATGATCAACTTTTCTAATTAATTCAGACAAATAGAATCCATGAGTGAGATTCATTTTAAACCAATGAGATTGTTTCAACAAACGACACTTTTATTTAATTGATCTTACCTTGAA

Associated Phenotype:

Not determined