ZMP

hoxc6a

Ensembl ID:

ENSDARG00000070343

ZFIN ID:

ZDB-GENE-990415-113

Description:

Homeobox protein Hox-C6a [Source:UniProtKB/Swiss-Prot;Acc:P15862]

Human Orthologue:

HOXC6

Human Description:

homeobox C6 [Source:HGNC Symbol;Acc:5128]

Mouse Orthologue:

Hoxc6

Mouse Description:

homeobox C6 Gene [Source:MGI Symbol;Acc:MGI:96197]

Alleles

There is 1 allele of this gene:

Allele Name	Consequence	Status	Availability
sa12505	Essential Splice Site	Available for shipment	Available now

Mutation Details

Allele Name:

sa12505

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

T > A

Consequence:

Essential Splice Site

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000103035	Essential Splice Site	112	222	None	3
ENSDART00000103136	Essential Splice Site	135	231	None	2
ENSDART00000130090	Essential Splice Site	112	208	None	2

Genomic Location (Zv9):

Chromosome 23 (position 36167420)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	23	36017073
GRCz11	23	36115876

KASP Assay ID:

2261-8087.1 (used for ordering genotyping assays)

KASP Sequence:

AACAACATTCARATCTACCCGTGGATGCAGCGCATGAACTCGCACAGCGG[T/A]GARTTTTTACTGYGACTTAGGACATACCCTGGTGGAATTGGTCTGTTTTA

Long Flanking Sequence:

AGGAAGCAGACCCCAAGCACAAAGAAAGAAAGTGTGAGATTAAGAGAGGGGAAATAAGATAGGAGGGTGAGTTGATGAGAGGGCGATAGGAAAGGTATGAATTCGTATTTCGCGAACCCGTCGCTCTCGTGCCATTTATCTGGTGGGCAAGAGGTTTTGCCCAACATGCCACTGAACTCGACCACATATGATTCAGTCAGACATTTTTCGTCTTATGGCACTACAGTGACCCAAAACCGGATTTACGCGTCCCCTTTCTATTCACCTCAAGATAACGTTGTGTTTGGATCAAGTCGAGGACCGTACGAGTATGGATCTAACGTGTTTCTTCAAGATAAGGACGTGCTTCCCAGTTGCAGGCAAACTAGTATGGGACTTAATGCGCAGAGCCACGTTGCCCAGGAGTACAACCTGGAACAAGCTCGTGCAGGAACACAGGACCAGAAAGCGAACAACATTCAGATCTACCCGTGGATGCAGCGCATGAACTCGCACAGCGG[T/A]GAGTTTTTACTGCGACTTAGGACATACCCTGGTGGAATTGGTCTGTTTTACGATACGTCCTATCAACAGAGTAGCTACATTTTATGGCCTCGTAAACCACTACTAAATCATCAGATTATAAAAGCCCCCTTTTCCAGAGAGGGGAATCCCATTTGGCTACCTCCTTTAAAACTCGAGTGCCAAAATTATTTTTAAAAAGTTGTGCAATAAGTGTGAGCGCGTTAGAAAATATACAACATAAAGGGCATTTTGAACTTTATTTCAGAAGCATGCACTACTGTGTTAACAATGCAGCTTAACTCTTCCGATGTACTGTTTGAAAACAGAGGATGACAAAGTTAGTTGACATAAATATTTGTATTACAAGCATTGGAAACCAAAATGTAAAGTTTCGCGTTGCTTTGTGGCTGAAATATGGGTCAAATTCTGCATGTAAACATTCTTTTTATCAAATTGTTAAATTAGTTACCTCAAAAATAAATTAACAAAATTTTCAGAAA

Associated Phenotype:

Not determined