ZMP

si:dkeyp-35b8.5

Ensembl ID:

ENSDARG00000060041

ZFIN IDs:

ZDB-GENE-070912-645, ZDB-GENE-070912-645

Description:

DNA ligase 1 [Source:RefSeq peptide;Acc:NP_001119860]

Human Orthologue:

LIG1

Human Description:

ligase I, DNA, ATP-dependent [Source:HGNC Symbol;Acc:6598]

Mouse Orthologue:

Lig1

Mouse Description:

ligase I, DNA, ATP-dependent Gene [Source:MGI Symbol;Acc:MGI:101789]

Alleles

There are 3 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa12017	Nonsense	Available for shipment	Available now
sa12131	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa12017

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000084174	Nonsense	662	1058	16	27
ENSDART00000127414	None	None	266	None	7

Genomic Location (Zv9):

Chromosome 2 (position 44389540)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	2	44475041
GRCz11	2	44328039

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TTTCTCTCATATTAGTGAGATGCCAAATTATGAYGCAATCATTCCTGTAT[T/A]GCTGAAGGAGGGGATTGATGAACTGCCCAATCACTGCAAGCTCACTCCAG

Long Flanking Sequence:

TTGAGCTCATTAGCAATATATTTTGCAAGGCTGATTCATTACTGTGAAAATGTTTGTGTTGCTCGAATGTTCTTATGTAAAAATTTCATCATGCATTGAGGAAAGCTATCCGTATTTAGATTTTAACACTGATTATTGTTGAAAGGCTAAAAATAGATTTTTAAAAATTTTTTATTTAAATGTCCAGCCAGGTTGGCTAGCGTTAGGTAAATATACGCAGTCGAGAGCACAACCTGATTGTCAAACACCAACCGCTGCTGTGAGGGATAATTATCTGTACACTACAAACAATATTTCAATTACGACTACAGGTGTCCCCTGCATAACAAGTGCTTTTTTAATGAGTATTAGCATAATTTGTACCCTGCAGGAAGCCTGATTTTAACAAATTGGACAGGTGTTGCAGTTGCTTTAAATCACCTCAATGCATGCAAATAATGTTTTCTGTGCTTTCTCTCATATTAGTGAGATGCCAAATTATGATGCAATCATTCCTGTAT[T/A]GCTGAAGGAGGGGATTGATGAACTGCCCAATCACTGCAAGCTCACTCCAGGTACTGACCATTCGTAGCTTGCTCAGTTCTACTACTACTAAATGAAAATTTAATTTTAGAAATGGACTAAACTGTATTATGTTTTAAAGGGGTTCCTCTGCGACCCATGTTGGCTCATCCGACTAAAGGGGTTGGTGAGGTAATGAAACGTTTCGATGAAGCCTCCTTCACCTGCGAGTACAAATATGATGGAGAGAGAGCCCAGGTGTGCTATTTTAATCTTATTCCACAAGGTGGAGCCTCAGTCCTAAAAGTGACCTTTTTTGTTTCCATAGCAATACCATTGATTGAACTAATTGTTTTTTCTTTGCATTTAACAGATCCATATTCTTGAGAACGGAGAGGTGCGCATTTTCAGCAGAAACCAAGAGGACAACACGAGCAAATACCCTGATATTATCTCACGAATCCCACAGGTAATGCAAATGCAAAGCAGAGGGATAGAAATAG

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa12131

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000084174	Nonsense	936	1058	23	27
ENSDART00000127414	None	None	266	None	7

Genomic Location (Zv9):

Chromosome 2 (position 44365872)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	2	44451373
GRCz11	2	44304371

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

TTTCTGCTGGCCTGCTATGATGAAGAGAACGAGGARTTCCAGTCTGTYTG[C/A]AAGGTGTGTTTGTGTGTGTGTAAGTGTGCATGTGGCTTGTATTCTTTACA

Long Flanking Sequence:

TGACAGCCTGAGTCACCAATCACTTCTATTTGCATGAGAGCAGTGATAGTAAATGGTGACTGAGGCTGTCATTCTGCCAACATCTTCTTTTGAGTTTCCCCGAAACAATGAAATTCATACAGGTTTAAAATGACAGGAGGGAGAGTGATGACAAGTGCGTGCCGTTCTACCTCTCGGGTACATTTATCGGGTTTTAATCGTTTTGTTTATGTTCCGTACTCCAGAACAAGACAAAGATACCGATAAAATGCTTTCTTGCAGTGTAGTTATGCAATTTATTCATATTTATACCACTGTCAGAATTGTCATTTGCTAGTGCTATATTGCTTCTAATGGTGTGTTTTTCTGCAGCTGAAAAAGGACTATCTGGAGGGTGTTGGAGACACCGTGGATCTGTGTGTGATTGGTGCATATCTGGGCAAGGGGAAGAGAGCAGGCGGCTATGGAGGATTTCTGCTGGCCTGCTATGATGAAGAGAACGAGGAATTCCAGTCTGTTTG[C/A]AAGGTGTGTTTGTGTGTGTGTAAGTGTGCATGTGGCTTGTATTCTTTACAGTTAGGCGAATTTTTTGGCTGAAATCACACCAGATTAGGTATTTTGAAAATGTAAAAATGCAGATCGTTTCCTGTGAATGGCTGGGTTTAGGGTTGGGGTAGGGGATAGAATATGCAGTCTGTACTGTATAAAAATCATTACGTCTATGGGAAGTCTCCTTGAGGATAGCGATAAGTTTGTGTATTTACACACAGGAAAACTAGGACTATGTAATGTAATGTAAAAATATTGTAATGTGTAATTATATAGAGCATTTTTTGTGTATGTATGTATGTATGGTCATACACTCAAATCGCTTAACAATCATGAGGTGGGCTGTCTCCACACCACCACCAGTGTGCAGCATCCACTTGGATGATGCGAATGCAGCCACAGGACAATGTGCCAGTGTGCTAACCACACACCAGCAATTGGTGGAGTGGAGAGACCGTGATAGAGCCAATTTAGTG

Associated Phenotype:

Not determined