ZMP
si:dkey-229d2.1
Ensembl ID:
ZFIN ID:
Description:
Novel protein similar to vertebrate transmembrane channel family [Source:UniProtKB/TrEMBL;Acc:A2BFV3
Human Orthologue:
TMC1
Human Description:
transmembrane channel-like 1 [Source:HGNC Symbol;Acc:16513]
Mouse Orthologue:
Tmc1
Mouse Description:
transmembrane channel-like gene family 1 Gene [Source:MGI Symbol;Acc:MGI:2151016]
Alleles
There are 6 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa40426 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa11855 | Nonsense | Available for shipment | Available now |
| sa26471 | Nonsense | Mutation detected in F1 DNA | Not yet available |
| sa807 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa40426
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000098446 | Nonsense | 397 | 720 | 13 | 20 |
| ENSDART00000131515 | Nonsense | 351 | 733 | 9 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 27305514)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 25060812 |
| GRCz11 | 5 | 25660965 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GGAATGTTCTGCCCGATGCTGTTCGATGTGATCAGCACTTTGGAGAACTA[T/A]CACCCACGCATTGCCCTCCAGTGGCAGCTGGGACGCATCTTTGCTCTTTT
Long Flanking Sequence:
TGGTATATGTTACCGCAAGCACATATTTCTTGGTTCCCATGAATGTACACCATGGCACATTTTCCCATTGAGCCTGTGTTGATAATACAAGAACTGAGGCAGCCACTTTAATTTCGCCTCTCTTGGCTTCATAATAAATTCAGCAATTTAACAGGAGGCTATTGTGGAGGAGCAAGAGAGCAGAAAAGATGACAACATCCACCTGACAAGATTCCTCAGAGTGCTGGCCAACTTCCTGGTGCTCTGCTGTCTGGCAGGGAGCGGGTACTTGATCTACTTTGTAGTACGCAGGTCTCAGAAGTTTGCACTGGAGGGCCTGGAGAACTACGGCTGGTGGGAGAGGAATGAGGTGAGACCCATGAAGCAGAGCACGATGGTAATCCTCTGCTTCAACGGCAAAGAAATAACTAGTGCATTAACCCTCAGGTCAACATGGTGATGTCTCTGTTGGGAATGTTCTGCCCGATGCTGTTCGATGTGATCAGCACTTTGGAGAACTA[T/A]CACCCACGCATTGCCCTCCAGTGGCAGCTGGGACGCATCTTTGCTCTTTTTTTGGGGAACCTGTACACATTTATCATCGCCCTCATGGATGCCATCCAACTAAAGGTACACCTTCATTTAACAAAGCACTCACAGTCTCATCTTCAGTCTGTCTTTTGTACAGAATACTAGATCCTACAGAATCTGTGTTAAATGAATCATCTTCTTATGAGGGTGATTTATCCTCCTAACTGTCAATTTTCAAGAGGGCAGAAGAGGAGATTGTGAAGAAGAATATGACAATCTGGCAGGCCAACTTGTACAATGGGACTGTGCCAGACAACTCGACTGCTCCTCCGCTCACTGTGCACCCTGCTGATGTTCCCAGAGGGCCTTGCTGGGAGACCATGGTGGGACAGGTACTTGAGAAGAGTGCTTCAGTTCAGTTCAGATTTAATTGTATTGCTCTTTTCAAAAACTTGAACACAATATGTCCCGAAGCAGCTTTGAAAAGTACCAAA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa11855
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000098446 | Nonsense | 557 | 720 | 17 | 20 |
| ENSDART00000131515 | Nonsense | 511 | 733 | 13 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 27302864)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 25058162 |
| GRCz11 | 5 | 25658315 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TTTGTTAATCTGTGTGTTTGTTTCAGGATGGGTGCATTCTACGCWCCATG[T/A]CTTCCAGCACTAAATCTTCTTCGTCTTCACGTGTCTATGTACCTGCAGTG
Long Flanking Sequence:
AACAGAATAAAAAAATTCACAAGGTTTTGATGGTGAGTAAATGGTGAGTACCTTTTAATTTTTGGGTGAACTATCCATTTACATTAACATCTCTTATTTCTACAGGAGTTTGTTCGTCTTATCATTTCTGACACAATGACGACTTACATCACTCTGCTGATTGGGGATTTTATGCGTGCCGTACTGGTGCGATTCCTGAACAACTGCTGGTGCTGGGATCTGGAGTATGGCTTTGTGAGTGAGTGTCCACCACACATAGCAACATATGCATCACGACTTCCATAATTACATTTGCTTTCTTCATTAGCCATCCTACTCAGAGTTTGATGTTAGTGGGAATGTTCTGGGGCTGATCTTTAACCAGGGAATGATCTGGTAAGAATTATCTCCATATTATGTTGCATTTGCTTTCTCCTTTTTCAGAAATGAAAACCAGCATATAATCAAATCTTTGTTAATCTGTGTGTTTGTTTCAGGATGGGTGCATTCTACGCTCCATG[T/A]CTTCCAGCACTAAATCTTCTTCGTCTTCACGTGTCTATGTACCTGCAGTGTTGGGCAGTGATGTGCTGTAATGTGCCTCAGGAACGCGTCTTCAAAGCTTCAGGCTCCAATAACTTCTACATGGCCATGCTGCTGGTCATTCTTTTTCTCTCTACATTACCAGCCATATACACCATTGTCTCCATTCCTCCCTCCTTCGACTGCGGGCCCTTCAGGTTCTGAAATCAATTAGTTTATATGCATTAGGAAAGTAGTGTTTGACATATTGGTCATTTCAAACATGTCAATTATTTTAAAGTATGGAGTAACAGAGGTGATGAAAAAGAAGTTGAGGGATGTTTCCAATTCCAAGTTTTGCAATCGGTAAATCTTAACACTAGGGTGCAGTAGAGGGCAAGTGTTAGAGGTTCTCACATCCTTATTTCTGCTCATAATTGTTAGTTATTTTATATAATAAATATTATTATATAACTATTACATATATATAACTATTAACTATT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa26471
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000098446 | Nonsense | 692 | 720 | 19 | 20 |
| ENSDART00000131515 | Nonsense | 646 | 733 | 15 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 27300825)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 25056123 |
| GRCz11 | 5 | 25656276 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ATTACCTGCAGTCCACTTCGAAAACGTATAAAAGAGTAAACATGGAGCTG[A/T]AAAAGAAACTTCAAGCAGTAAGTTCAAACCTTAGATTTCAAACGGGAAAA
Long Flanking Sequence:
TACTTTTTTGGGGTAGGCTATGAAAATCAATGGCAAAATTAGATTTTTGTATTCAATTAATTAGCTAAAAGAAGAGGTTAATGTAATAATTATTTATTATTAGCGTTATTAGAAGTGCCTTAATAATAATAATAACAATAATAGTATAAAATGGTGTCCATTTACATAATTCAAATGGATTAGGGTTAGTTGTTCTTTAAAGGTTTTTTGGGCAAACTGATTTTGTATGTTCTTGCAGTGGGAAACCCCGCATGTTTGATGTGATCCAGGAGACTCTGGAGACAGATTTCCCTGCCTGGTTCAGTAAAGTGTTCAGTTATGCCTCAAACCCCGGTCTGGTGCTGCCGTTCCTTCTTCTTTTGGTGTAAGTGAAATAATTACACCCGTATACTTCTGTAAAAATGTGCCATTGAATATGTACTTTTTTCTCTCATTTTAGTCTCGCAATATATTACCTGCAGTCCACTTCGAAAACGTATAAAAGAGTAAACATGGAGCTG[A/T]AAAAGAAACTTCAAGCAGTAAGTTCAAACCTTAGATTTCAAACGGGAAAATATTAGAAGATGAACTTTTGTAAACGCACCACTAGGTGGAAGCACTAACATTAAGATGCAAATTCTGATCTCAAACACATTTTTTGTTGAACGATATTTATTATAATTTATTATCTAAATCAGGGGTGCCCAAACTTTTTATTATGAAGAGCCTGAAACCAAACTTGATTGAGGGTGGTGGGCCGAATTTAACTATAGTTCTCCTCTGTAATTTCCTAATTTATTAAATAACATTTAAAAATAACTTGAAAACGTTGCTTTATATTAACCAATACAGCACATTTTTTACATTATATAATGAACTTATTGCTGTAAAAACAAAAACAATCTAATTTATGACAGAATGGAGTTACACTATTTTGTCTTGGTTTGCCCACTGATGTCTTCTGCATAGTCCTCTATCAGTCGAGTGACATTATTTACATTTTTAAAAATAAATATATAAATACA
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa807
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000098446 | Nonsense | 698 | 720 | 20 | 20 |
| ENSDART00000131515 | Nonsense | 652 | 733 | 16 | 17 |
Genomic Location (Zv9):
Chromosome 5 (position 27298017)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 5 | 25053315 |
| GRCz11 | 5 | 25653468 |
KASP Assay ID:
554-0712.1 (used for ordering genotyping assays)
KASP Sequence:
AAAAANTCAACAGGTCATGTTTAGTCATATATCCAATTTTGTATTGACAG[C/T]AAAATGAGGAAAACAAGAAAAAGAACAAACTTGCAGCCTTAAAAGCAGCC
Long Flanking Sequence:
TGTGTGATGGTTTGATTGTTGATGGTCACAGGCCTATGGAATCTAGTAAAATATTATGTACTGTCATCATGGCAAAAAAAAAAAAAATAAATCGGTTATTAAAACTATCATGTTTAAAAATATGTTGAAAAAATCTTCTCTCCGTTAAACAGAAATAAGGGAAAAATAAACAGGGGGACTTGTAATTCTGACCTCAAAATATTTAAAACACACACACACACACACACACACACAAAAACACACAAAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATATTATGACAAAACAAACTAATTAATCTTGACCCAGCACTAATATATAAATAAATAAATTGCAGCGCTGAACTTTGATCTCTTTGCTACTGTTAAAAAAATCAACAGGTCATGTTTAGTCATATATCCAATTTTGTATTGACAG[C/T]AAAATGAGGAAAACAAGAAAAAGAACAAACTTGCAGCCTTAAAAGCAGCCAGTGACTTGGAGCAGGCAAGAAAAGCTGGAGAGCAACGCAGAAACAGCATCTCAGATTTGGGTGAGAGCACACAGGATGGGTCACAGCTCCCATCAGTCAATGCACTAGACAGCAGCTTGGAACCGATGCAGGGAAACTTTCCGTTAATGTTGAAGTGTCAATGTGCTTTGCTTAGACAACGGGCCACAGTCTTAAATCAACATGCCCCTGTTTCTTTATATAAGTTAAAGGTCTCTTTGTGTCTACTCTTTCTCAGGAGTGAATGAAGAGAATCCTGAATCTCACGTTTCCTCATCCCACACATCCAGACCCCCTGCGTCCCGTGGCCACACATCATCTGGACATCTTCCAGGTCACCCGCAGCAGCCACAGAAAAATTCGAAGAAGAGATAAAAATCACACATAGATTTCAGTGTGTTTGTCACAATCACAACATTTAGCACTTATTT
Associated Phenotype:
Not determined