ZMP

pcdh17

Ensembl ID:

ENSDARG00000027041

ZFIN ID:

ZDB-GENE-090608-3

Description:

Protocadherin-17 [Source:UniProtKB/TrEMBL;Acc:C4P342]

Human Orthologue:

PCDH17

Human Description:

protocadherin 17 [Source:HGNC Symbol;Acc:14267]

Mouse Orthologue:

Pcdh17

Mouse Description:

protocadherin 17 Gene [Source:MGI Symbol;Acc:MGI:2684924]

Alleles

There are 5 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa16710	Nonsense	Available for shipment	Available now
sa11699	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa16710

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
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Mutation:

C > T

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000125630	Nonsense	843	1137	2	4

Genomic Location (Zv9):

Chromosome 11 (position 33467868)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	11	32391916
GRCz11	11	32654728

KASP Assay ID:

2260-4482.1 (used for ordering genotyping assays)

KASP Sequence:

CACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGGCAG[C/T]AGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGT

Long Flanking Sequence:

TAAATACAATTAGCTTCTATTAAGAACAATAGTTGTGAATGGGATGCTCCCCGATGGATAGAGAAGGTTGTGTGTGTGGGTGAACGTTCAGAGCCTTTAACAACTTCAGCAAATCTTCTCATTTTCTTACACCACACACACACACACTCCCTCTTATTCGCTCCATTTTTTTTTCTTCTGCCGTGCTCCTCCACTCGTATTCGTATCTAACAGGTCATTAAGTTCACAAATGTGCAATTGAGTGTTTTGGATGTTTAATTAGCATGTTTCCTTGACTAATTAAAATGCACAAATCTACGGATTAAAGCTCCCCTCCTTTTCTCCATCTCTTCCACCACCCCCCCTCCTTTTTATGAATAATTAATCAATCTCTTTCACCAGGAGATTCTGTCGCACACCAGGACACATTTCAGTGTCGCGCAAGACGTAAACTCTTTTCCTTTTCCCCTTCACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGGCAG[C/T]AGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGTTTTTTTACACACAGACGTTCTTCAGATAAGAGCTAAGAAGCCATGCCAGGGTTAATCTGTTTGATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCTCAACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGGACAGCGACCAAGCGGACAGCGATCAGGACACTAATAAAGGCTCCTGCTGTGACATGTCTGCTAAAGAAGCGCTCAAGATGAAGGCCACTGGACTCAAGCCTCAGCCACTTGAACAGGGTGAGTCCTTCAACATGAGCAACTTTAATAGTCTGTGCGCTATCACAGTCTTTTCTTTCGCCTTTTGCTCTTTGTTACTGGACGTCCTACAGTACGTGTCTGTTGCTTTATTCTAGTGTTAAGCTGTCTTCACAAGGCATGTTTCACAAATGCAGAAGACTTTTGCGTCT

Associated Phenotype:

Not determined

Mutation Details

Allele Name:

sa11699

Status:

Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.

Availability:

Order Allele From ZIRC
Order Allele From EZRC

Mutation:

C > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000125630	Nonsense	849	1137	3	4

Genomic Location (Zv9):

Chromosome 11 (position 33467705)

Other Location(s):

Assembly	Chromosome	Position
GRCz10	11	32391753
GRCz11	11	32654565

KASP Assay ID:

None (used for ordering genotyping assays)

KASP Sequence:

GATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCT[C/A]AACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGG

Long Flanking Sequence:

CATTTTTTTTTCTTCTGCCGTGCTCCTCCACTCGTATTCGTATCTAACAGGTCATTAAGTTCACAAATGTGCAATTGAGTGTTTTGGATGTTTAATTAGCATGTTTCCTTGACTAATTAAAATGCACAAATCTACGGATTAAAGCTCCCCTCCTTTTCTCCATCTCTTCCACCACCCCCCCTCCTTTTTATGAATAATTAATCAATCTCTTTCACCAGGAGATTCTGTCGCACACCAGGACACATTTCAGTGTCGCGCAAGACGTAAACTCTTTTCCTTTTCCCCTTCACAGACAGACAATTTTCCTGCTGAGCCCAATTACATGGGTAACAGGCAGCAGTTTGTTCAAAGGTAAGGCCTATTTAACAGTTTTCTCAGCGTTATTTGTTTTTTTACACACAGACGTTCTTCAGATAAGAGCTAAGAAGCCATGCCAGGGTTAATCTGTTTGATCTTTTTTTTTTTTTTTGGTCTTGTTGTTTTTTGGACTTGTAGCAGCT[C/A]AACGTTCAAAGATCCAGAGCGTGCCAGTCTCAGAGACAGCGGACACGGGGACAGCGACCAAGCGGACAGCGATCAGGACACTAATAAAGGCTCCTGCTGTGACATGTCTGCTAAAGAAGCGCTCAAGATGAAGGCCACTGGACTCAAGCCTCAGCCACTTGAACAGGGTGAGTCCTTCAACATGAGCAACTTTAATAGTCTGTGCGCTATCACAGTCTTTTCTTTCGCCTTTTGCTCTTTGTTACTGGACGTCCTACAGTACGTGTCTGTTGCTTTATTCTAGTGTTAAGCTGTCTTCACAAGGCATGTTTCACAAATGCAGAAGACTTTTGCGTCTCAGGCTGTTCACATAAGATAAAATCTTGATTTTGTATTAATTTCTTTTGGTCTGTTCCACCTTTTTGCCCTTCTTGACTGTTTCCAACAATTAATATCATATATGGGTCAATGACAAGGCGTCCCATTTTGGTGTCCGCATTAAATTATATTTAGAAAAGTGA

Associated Phenotype:

Not determined