Busch Lab

ZMP

LOC559514

Ensembl ID:
ENSDARG00000077052
Human Orthologue:
TNRC18
Human Description:
trinucleotide repeat containing 18 [Source:HGNC Symbol;Acc:11962]
Mouse Orthologue:
Tnrc18
Mouse Description:
trinucleotide repeat containing 18 Gene [Source:MGI Symbol;Acc:MGI:3648294]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa33269 Nonsense Mutation detected in F1 DNA Not yet available
sa15126 Nonsense Available for shipment Available now
sa33270 Essential Splice Site Mutation detected in F1 DNA Not yet available
sa1164 Essential Splice Site Confirmed mutation in F2 line Not yet available
sa33271 Nonsense Mutation detected in F1 DNA Not yet available
sa20097 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa33269
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103486 Nonsense 325 2925 4 29
Genomic Location (Zv9):
Chromosome 3 (position 40438136)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 40301496
GRCz11 3 40443354
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
ACAGGGACGATGAAACCATCCGACCAGGGGGCCACCTTTCTAACGACAAA[C/T]AGAAAAGATGCGATTCAGTTGCTACATCAGCTGGCACTCTGCATGTTTCG
Long Flanking Sequence:
ACCTGCCAGGTTCAGTGCACTCCCAGTCTGCAATGGCTAGAAGCCCAGTGGCTCACATGCCTGGCTCCTTCTCCAGGGAAAGGGAGTCCTTACCTCCTCACAAAAGCTCTAAAGAGTCGAGCAGAGATGTGGGAAAAGAAAAGCCCTGTAAGAGTGACCTAGCCCACTCCCTCCCAAGGAAAGAACGAGAAAAACCAAAAGAGGAGTCACGGCCTCACAGTGTGGTGGACCTCACCTTGGATCTCAAGGCGGAAGATGAGCGCAGGGTAGGCAACTTGGAGAGGCCTGCAAAAACTACAGAGCATGCTCGGCCTTTCTTTCACCAGCACTCGCCTGCTCTAAGTAACACGGACACTAAACCCAAACAAACTAACCATAGTTTACTTGGCAACTCCGGGACAAGCAGCGGCACGCCAACCCGACATCAGAGTACAGAACAGGACAGGAGGGACAGGGACGATGAAACCATCCGACCAGGGGGCCACCTTTCTAACGACAAA[C/T]AGAAAAGATGCGATTCAGTTGCTACATCAGCTGGCACTCTGCATGTTTCGTATGCCAGTCCCTCTTCCCTGCAGCCCAGCCCATCCCATCTCCCGCCCAGGCTGGTGTCCTCTGGCACCTACCCTCCCCCTCACCACATGCCGCCCAGCATGTACCCACTCTACTCTACAACGAAAGAGCCAGGCAAAGAACACAGAGTGATAGCTCCTACTTATGTGCCTTCTGTCGAGGTTTACGATGAGCGAAAAGGGCCAATTCAAATTGCCTCCCAAGCTCGAGATAATAAAAATGACAAGAGCAGGGAGAGGGAATCGCACAGATCAGCCCTGCAGTTGGGAAATGAGAGAACACTTATGGACCATGGTCGATCCTCCGTTAGGAGCGAGTCGCCGCCTCACGGGGATGTCAAAAGAGACATTTTACGAGAGGAAGGCTCGATAATTAGGTCAAATGGTTTGGCCATGAAAAAGCCTTTGCATTTGGAAATGTGCACAAATAAA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15126
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103486 Nonsense 477 2925 4 29
Genomic Location (Zv9):
Chromosome 3 (position 40438593)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 40301953
GRCz11 3 40443811
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAAAAGAGACATTTTACGAGAGGAAGGCTCGATAATTAGGTCAAATGGTT[T/A]GGCCATGAAAAAGCCTTTGCATTTGGAAATGTGCACAAATAAATCTGGAA
Long Flanking Sequence:
CGATGAAACCATCCGACCAGGGGGCCACCTTTCTAACGACAAACAGAAAAGATGCGATTCAGTTGCTACATCAGCTGGCACTCTGCATGTTTCGTATGCCAGTCCCTCTTCCCTGCAGCCCAGCCCATCCCATCTCCCGCCCAGGCTGGTGTCCTCTGGCACCTACCCTCCCCCTCACCACATGCCGCCCAGCATGTACCCACTCTACTCTACAACGAAAGAGCCAGGCAAAGAACACAGAGTGATAGCTCCTACTTATGTGCCTTCTGTCGAGGTTTACGATGAGCGAAAAGGGCCAATTCAAATTGCCTCCCAAGCTCGAGATAATAAAAATGACAAGAGCAGGGAGAGGGAATCGCACAGATCAGCCCTGCAGTTGGGAAATGAGAGAACACTTATGGACCATGGTCGATCCTCCGTTAGGAGCGAGTCGCCGCCTCACGGGGATGTCAAAAGAGACATTTTACGAGAGGAAGGCTCGATAATTAGGTCAAATGGTT[T/A]GGCCATGAAAAAGCCTTTGCATTTGGAAATGTGCACAAATAAATCTGGAAATAGCCCAGATGCCAGGGACTTGACTAACACTACATCAAAACACATGATCAGAACAGGACTCGAGACTGAATCCCGCAGCCAAGAGCGGGATAGGGTTCAAAGATCTACCCATTCCTTCTCTGGAATGGATCCAAGTTCGCTTCACACTGAGCAGCATCCGTTGAAGACCTTGGGTTCTGCTGAGCCCAAATGGAAGCCTTTCGAGATGGGCAATTATGCTACCAGTCACATGGCTGCATTGGCAGCCCAACACAACCACGGAGCCCGAGGTGAGGAAGAGGGCAAGCAAATGTACCTAGACACTACTAGCTTGCACAGACCAGTAGGCAGCAGTGGAAGTCCTGATGGACATGGGGAGGTTTCAGCTATGCAGAGCCTCATCAAATATAGTGGCAACTTCTCCAGTGAGTCTGGCTCTAGGCACGGATCCGATAGTCGTAGTCCATTTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33270
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103486 Essential Splice Site 1459 2925 12 29
Genomic Location (Zv9):
Chromosome 3 (position 40450661)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 40314021
GRCz11 3 40455879
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TAGCTGCTGTTTGGAGTCAAGCTACAGACATTAATCTTGCTTTTTCACTT[A/T]GATGTTCTCCAAATCCTCTTTGGAGGGAATGGATGCCGCAGAAGTAGACT
Long Flanking Sequence:
ATACAAGTATTCAGTAGTTTACTTCACAATAAAAATAAATGTATTAAATTAAAGCTGTTAATAAACTTCTTCCACCGAAAAAGCACAATTCTGTTGAACACAAAAGAAGCTATGCTAAAGAATGTTGGAAACTAACAACCATTGACTACCGTTGTTTTTGTTTGTCCTACTATGGATGTCAATGGAAGTCAAGAGTGAGTAAGGGTGTGCATGTCTACCGAAGTAGGGTTTTTTTTCTGATAAAATATATTATGTTAGTCACTTTTTCAAGGTTTTCAATATATATAAACTTTAATAAAAGTGACACTGAGAGGAAAATGGGAATATCATCAGGAAATAATTGCTTGAGCAAGTTTACGACTGGGCCAAAACCCCGTCAAATGCATTGTCTAGCACCACCACTGTTTCCCGGTCATTTGATTTCAGCTGGATGCCCATAACCAGTGTTAATAGCTGCTGTTTGGAGTCAAGCTACAGACATTAATCTTGCTTTTTCACTT[A/T]GATGTTCTCCAAATCCTCTTTGGAGGGAATGGATGCCGCAGAAGTAGACTACCGCGTGAGACTGGCTGAGCTGCAGCAGCGCTACAAAGAAAAGCAACGAGAGCTGGTCAAACTGCAGAGACGGAGAGACAAAGAGTGAGTCTTTACATTACCTCCCATTGCAGCACTTCATTAACGCCGCTAATTGCAAACTACCTCACTTAATCCCACTAACAGCCAGACAAACGGCAATTTATGATCTCTCTGATTCACAGAGAGAAACGGCAGCAGCAACAACAACATATCCAACAGCAGGAGAGGAACAGAAGTTTAGCCCGCAGGGGCCCAGGACGTCCCCGAAAGAGGAAACATGGCCTGTGTGCGCTGTCTCCACCCTCCAGCAAGTTGGATTCGAGATGTGCAAAGTGAGTATGGAGCTCGGGCACCGTTAAGGTCCAGCTGTGCTCCACACAGCCTGCCCTGCAGCTGAACACACTGTTGTTTTGCAGGTTGAGCAGAAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa1164
Status:
Confirmed mutation in F2 line
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103486 Essential Splice Site 1553 2925 13 29
Genomic Location (Zv9):
Chromosome 3 (position 40451066)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 40314426
GRCz11 3 40456284
KASP Assay ID:
554-1074.1 (used for ordering genotyping assays)
KASP Sequence:
CTGTGTGCGCTGTCTCCACCCTCCAGCAAGTTGGATTCGAGATGTGCAAA[G/A]TGAGTATGGAGCTCGGGCACCGTTAAGGYCCAGCTGTGCTCCACACAGCC
Long Flanking Sequence:
TTCCCGGTCATTTGATTTCAGCTGGATGCCCATAACCAGTGTTAATAGCTGCTGTTTGGAGTCAAGCTACAGACATTAATCTTGCTTTTTCACTTAGATGTTCTCCAAATCCTCTTTGGAGGGAATGGATGCCGCAGAAGTAGACTACCGCGTGAGACTGGCTGAGCTGCAGCAGCGCTACAAAGAAAAGCAACGAGAGCTGGTCAAACTGCAGAGACGGAGAGACAAAGAGTGAGTCTTTACATTACCTCCCATTGCAGCACTTCATTAACGCCGCTAATTGCAAACTACCTCACTTAATCCCACTAACAGCCAGACAAACGGCAATTTATGATCTCTCTGATTCACAGAGAGAAACGGCAGCAGCAACAACAACATATCCAACAGCAGGAGAGGAACAGAAGTTTAGCCCGCAGGGGCCCAGGACGTCCCCGAAAGAGGAAACATGGCCTGTGTGCGCTGTCTCCACCCTCCAGCAAGTTGGATTCGAGATGTGCAAA[G/A]TGAGTATGGAGCTCGGGCACCGTTAAGGTCCAGCTGTGCTCCACACAGCCTGCCCTGCAGCTGAACACACTGTTGTTTTGCAGGTTGAGCAGAAGTGTGCTTTACTCAGAGGACTCGGAAAGCGGGGAGGTGCTGAGAAAGCGCTTTCGGGCCTCTAACAGAGATGAGGAGGAGGAGGAGGAAGACGGCAGCAGCGCGTTGAAATTGAAGAAGAAGAAAAAGAGCTGGGGCGAGCAGGAGGCATGTTCAAGCTTCTCTCATGAGGTTGGTCTCTTTTATACTGGAGTCATACTAAAGCAATTCTGGCTTCGAAACATTCGAGATTTTGTTGAACCAACATGTTGTTTCTAGTTAGAGCCATGGTGCTCCAAACATGAGCTTTGCTGTTCCTACAAGTGATGCAGGTTCAAGTTTTGCCAAGGCTGAATCATTTTCTTTTAGATAGCCCATTCAATACTCATTTGGTGCAATCTCTATTGACAGGTCCCAAAAATGGCTGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33271
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103486 Nonsense 1620 2925 15 29
Genomic Location (Zv9):
Chromosome 3 (position 40451568)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 40314928
GRCz11 3 40456786
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CAATACTCATTTGGTGCAATCTCTATTGACAGGTCCCAAAAATGGCTGTG[A/T]AGAAGAGCCGAGTAAGCGAGCAGGAGCAGTTGGCATCCAAACTCGACAAG
Long Flanking Sequence:
GAGTATGGAGCTCGGGCACCGTTAAGGTCCAGCTGTGCTCCACACAGCCTGCCCTGCAGCTGAACACACTGTTGTTTTGCAGGTTGAGCAGAAGTGTGCTTTACTCAGAGGACTCGGAAAGCGGGGAGGTGCTGAGAAAGCGCTTTCGGGCCTCTAACAGAGATGAGGAGGAGGAGGAGGAAGACGGCAGCAGCGCGTTGAAATTGAAGAAGAAGAAAAAGAGCTGGGGCGAGCAGGAGGCATGTTCAAGCTTCTCTCATGAGGTTGGTCTCTTTTATACTGGAGTCATACTAAAGCAATTCTGGCTTCGAAACATTCGAGATTTTGTTGAACCAACATGTTGTTTCTAGTTAGAGCCATGGTGCTCCAAACATGAGCTTTGCTGTTCCTACAAGTGATGCAGGTTCAAGTTTTGCCAAGGCTGAATCATTTTCTTTTAGATAGCCCATTCAATACTCATTTGGTGCAATCTCTATTGACAGGTCCCAAAAATGGCTGTG[A/T]AGAAGAGCCGAGTAAGCGAGCAGGAGCAGTTGGCATCCAAACTCGACAAGGCCTTGTCCCTCACTAAGCTCAATAAATTCAGCAAGCCTTCTTGTAAGTTCATAGACGGTTCCTCAGGGAAGTCCAGGCCTAGCTCTGGAAGCAGAGTCCCAATGCTCACCGATTTAGATGTAAGAGTTAAGATGGGGAAATCAAGCCTGTCAAAAGATCTCGGCATCTTTCAGAAGACTTCCAAAGGAGGTAAAAGCAAAACGGCTGCCAAAACGAAGCCTTCTGAAGCGTGCCTTAAGGGAAAAGGCCAGAGGAAAGCACCTTATTCTCCAGTGAGGTCAGAAATCAGCAGCTATTCTAACAGTAAGTCTGTTTTGTTGTTGTCAGTGTTTGATTTCTGATGTAAACATGTTACCACAAATGTTTTTTCTTCCATCTGTGTTTTGCTTTCTTTCATATTTTCCCTTTTATGATAATATCTGTTATTAAAAAGTGCTGTGGCACTGCAT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa20097
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000103486 Nonsense 1980 2925 18 29
Genomic Location (Zv9):
Chromosome 3 (position 40462467)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 40325827
GRCz11 3 40467685
KASP Assay ID:
2259-3923.1 (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
CTCCCCGGGAGTTCAGTTTTGACCTTACAGCGGATGGGAGTGAAGACGAA[C/T]AGTGGACACGGCGGAGGAGCGAACGCATCTTCCTCCATGATGCTGCTCAG
Long Flanking Sequence:
TGTTTAGATGAAAAAAATATTGACTTTACTAAAATAGCCATGTGTACAGTTATGCCTGAGGTATTTCGTAAACATTTTACTATTTTCTTTTTATTTGCAAGAGATCTAATTGATTTAACCATGCTCGAGACAGTTACACCATAGGACAGTTTTGTAAAAGAATGGAATAACAGTTTTTAAGTTAAGAGGTCCATTGGAGACAAAGAAATGTCACATGAAAGCGTATTGCGTGTTTGCTTTAAGTAATAATTAAATGTTATATCTTCTGGATTGTAGGTACGGAGTTTGAGTTTACCGATTCGGAGAGTGATGTCAAGACAAGAAAGAAGTTTCCGTCGCTGTTGCATGGCAAGAGATCCGCTCCCGAGCTTCCTCTCTTGCCTCCCGCGAGCGTGATGCGTGACGACTCCAGCCCCACCAAGCGTGGACGCAAACCCAAGAAACCCAAGTCTCCCCGGGAGTTCAGTTTTGACCTTACAGCGGATGGGAGTGAAGACGAA[C/T]AGTGGACACGGCGGAGGAGCGAACGCATCTTCCTCCATGATGCTGCTCAGTCCACCCCCATCTCCCCGTCCAGCAAAACTCCTCTTCCGCTCACTCCCAAACCTGCTCGCGGCCCCAAAACCTCCCCGCAGAGCCCCAAGGAACTGGTCAAAGCCAAGGAGGTGAAAGATCCCAGCAAGGTAAGCCATTGTTTTATTGATATATCTCAAATCTTGCTTGCCAGCCACAACCAAACGGTATGGGCGCTTGATACCACCAGCAGGTGTCCTGCTACATTTGTCGGACAAGGAAGCCTCCCGCTGTGAGTGTCATGTTGTTGGACACAAAAGGATGACTGCAGCTTGCCAGGCTACAATTACTAACCATCACCATTCCTCCCTCCGAGTCCTCCCGTGTTTTTCCTTTCTCTTAAGTGTTCAGTACACGGCTGCCTATTAATGTTTACTTGTCTATCCAGTGTTGTTGAATGGCTGTAATGTCTGGGAGAACTGAGCCCGATT
Associated Phenotype:
Not determined