ZMP

pcdh2ac

Ensembl ID:

ENSDARG00000058875

ZFIN IDs:

ZDB-GENE-041118-11, ZDB-GENE-041118-12

Description:

protocadherin 2 alpha c [Source:RefSeq peptide;Acc:NP_001007763]

Human Orthologues:

AC010223.1, PCDHAC1, PCDHAC2

Human Descriptions:

protocadherin alpha subfamily C, 1 [Source:HGNC Symbol;Acc:8676]
protocadherin alpha subfamily C, 2 [Source:HGNC Symbol;Acc:8677]
protocadherin alpha-C1 isoform 2 precursor [Source:RefSeq peptide;Acc:NP_114088]

Mouse Orthologue:

Pcdha1

Mouse Description:

protocadherin alpha 1 Gene [Source:MGI Symbol;Acc:MGI:2150982]

Alleles

There are 2 alleles of this gene:

Allele Name	Consequence	Status	Availability
sa10954	Nonsense	Available for shipment	Available now

Mutation Details

Allele Name:

sa10954

Status:

Available for shipment
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Availability:

Order Allele From ZIRC
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Mutation:

T > A

Consequence:

Nonsense

Transcripts:

Transcript ID	Consequence	Amino Acid Affected	Amino Acid Total	Exon Affected	Exon Total
ENSDART00000016582	None	None	1009	None	4
ENSDART00000050160	Nonsense	120	942	1	4

Genomic Location (Zv9):

Chromosome 14 (position 2739787)

KASP Assay ID:

2260-7165.1 (used for ordering genotyping assays)

KASP Sequence:

AGCCATTGTTAATAATCCATTAAACCTGTTTCGYATTGAGATAAMTATTT[T/A]AGACATAAACGACAATTCTCCCTCTTTTCGTATACGTTCTAAGTTATTTA

Long Flanking Sequence:

CCTCCTTATCTCTTTAGCGCGCGCTCATGCGCTTTGTTCTGTTCCTTCGTGGTGGCGGTATGCATATAAAGACATGGCATATACTGGAATATAACTAACTATTGGAACTTATTTCTGGCGGTGTCCAAAAATCATCAGCATAATGGCTCATATAATTGTTATGAGCGGGATCGTTATTTGTTTGGTTTTGCTGCTGTTGATGCCTTCAGCTTCAGCCCAGGTCGCATATTCCATTTCAGAGGAGGCGAACACTGGGACATTTGTCGCAAATATCGCAAAGGATCTTAATTTAAACATCCAAGAACTGGAATCACGTGGATTTCACATCCCTGCAGTTTCGGGAAGAAAATATTTCGAGGTTAATTTGAAAACGGGTGTTCTGTTCGTCAGCGAGAGGATCGACAGGGAGGCGTTTTGCCCTGCTTCTCCGCAATGTTCGGTGAATTTAGAAGCCATTGTTAATAATCCATTAAACCTGTTTCGCATTGAGATAAATATTT[T/A]AGACATAAACGACAATTCTCCCTCTTTTCGTATACGTTCTAAGTTATTTAATATATCGGAATTGTCTATTGTTGGAGATAGATTTCAGCTGCCGAGAGCGTCGGACCCAGATGTCGGAGCGAACTCAGTAAAAAGCTACAAACTGAGCCCGAACGAGCATTTCTCTCTGGATGTACAAAGCGGAGGAGAGCAAAGTGCTTCTGCTGAATTAGTGCTGCAGAAAGCTTTAGATCGAGAAAAACAGCCAGCAATCCACCTCACTTTGACTGCTGTAGATGGAGGAAAACCTCCCAAATCAGGTACAATGCAGATAATAATACATGTGCAAGATGTGAATGACAACGCACCCGTGTTCGGCAAAGCTCTTTACAAAGTGCGCATTGTTGAAAACGCACCATTGGGAACACTAGTCATCAACCTGAACGCCACTGATTTAGATGAAGGCCTAAATAGTGAAATTATTTACTCTTTAGTTCAGCAAGACAGCGATGATAAAGCAA

Associated Phenotype:

Not determined