ZMP
cdc42se1
Ensembl ID:
ZFIN ID:
Description:
CDC42 small effector protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6TEL3]
Human Orthologue:
CDC42SE1
Human Description:
CDC42 small effector 1 [Source:HGNC Symbol;Acc:17719]
Mouse Orthologue:
Cdc42se1
Mouse Description:
CDC42 small effector 1 Gene [Source:MGI Symbol;Acc:MGI:1889510]
Alleles
There are 2 alleles of this gene:
| Allele Name | Consequence | Status | Availability |
|---|---|---|---|
| sa36217 | Essential Splice Site | Mutation detected in F1 DNA | Not yet available |
| sa10753 | Nonsense | Available for shipment | Available now |
Mutation Details
Allele Name:
sa36217
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Essential Splice Site
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000031895 | Essential Splice Site | 18 | 75 | None | 5 |
| ENSDART00000130403 | Essential Splice Site | 18 | 75 | None | 3 |
Genomic Location (Zv9):
Chromosome 16 (position 40995854)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 38380654 |
| GRCz11 | 16 | 38330686 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TGCGTTCTGGCATAAGATTGGTTGCTGTGTGGTAGCCAAACCTCCTCCGG[T/C]AAGTGTCCCGTTTTGAGAGATTTATAGCTTGATTTCCCAGACCTTCAGCT
Long Flanking Sequence:
ATTACTGACTTACTAAATTACTACAGCTTACTGACTTTCACTTATGCATTCTAACTGCAATAACATCACTTTGGTAACTTTGCCAAAGACAGCAAAAAAGAGTGGCTCTTGTCTTTTATAAAGATTGCTAGTATGATAAATTCATTCAATGAAAACTGTTTTTCAGATTCATCTCCAACAGAACTGCCTCACATAAACCTCACAAAGTCCTACAGAATCCACTGGAAACCAGGGGCCCAGAATAATACGGGAATAAGGGGTCTTTGGCATAAACGTAAAGCAACAACGTCATCACTGATCCTGTCAGTGATCGGGACGGAGCTTTTTGGACAAGCCACGGCTTCTGTCGCTGAGTGTTGAGGATTAGATTCTCTCTCGATCTTGTCTCCCAACGGCCTGCAGGGTGGCGAGAGAGAGCGGCGAACCCAACCGGTGCGTGCCGGAGATGAGTGCGTTCTGGCATAAGATTGGTTGCTGTGTGGTAGCCAAACCTCCTCCGG[T/C]AAGTGTCCCGTTTTGAGAGATTTATAGCTTGATTTCCCAGACCTTCAGCTGATTAATACAGTGAAACCTAGTGTTGCGTGAATCACAGGTATTGATATAATGCTGCTTTTGAGATCAACATCTGGGCTAATTTCATCAGTCAGGCATTTCCAATGGCTCATGTGAGTTTTGTGCTCGCTAATCACGCAAGGAATGACTAACGTTGGTCTGGCACAGAAAAGAAACCTTTCAGCTGATGTGAATGTGACCCAGATAGTCTCAGGAGTGCAAATGTGTTTTTGAGAGTGAAGCCAGACGTGAAATGCAAATGGACAAAGAATGCTCTGTCACTGAACGGATGCGAGTGCAGAGGTAGCGTCATAGACCCAAACCACTTTGCATGTGGAGGAAGTACGATAAATGTTCCGACCCATGCATTTTCATTATCTTAAAGTGCACCTATGATAAAAATAAACTTTTGTAAGCTGTTTGGACAGAATTATGTGTAGGTATAGTGTGTT
Associated Phenotype:
Not determined
Mutation Details
Allele Name:
sa10753
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
| Transcript ID | Consequence | Amino Acid Affected | Amino Acid Total | Exon Affected | Exon Total |
|---|---|---|---|---|---|
| ENSDART00000031895 | Nonsense | 44 | 75 | 3 | 5 |
| ENSDART00000130403 | Nonsense | 44 | 75 | 2 | 3 |
Genomic Location (Zv9):
Chromosome 16 (position 40985563)
Other Location(s):
| Assembly | Chromosome | Position |
|---|---|---|
| GRCz10 | 16 | 38370363 |
| GRCz11 | 16 | 38320395 |
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CAGCATGATCGGAGAGCCCACAAACTTCGTTCATCTGACACACATAGGCT[C/A]GGGTGAAATGGCAGATGGCATSCAGCCGGTAAGACATGCTTTATTGTGTT
Long Flanking Sequence:
TCAGGCTTGACTCTGGCAGGTCTCATGAATAATTAAGCAGCCGGCTCTTCTTATAGGATAAGAAAACTCCGCTATGAATAATAATGAGAAACTGACGCGTCATCATTGCACTTGCAGTACTGCGCTACGTCGCCGATTTTGATCCCGCCCCAAAAATCATTTTAAACCCGGAAGCTAAAATTAGCTGACAAAAACTAAAAATTATCCAGTTTTCCCCACAATTAAAGCTGACAGGTGCTAACATTGTCTTAACTGATGCTCAACACACACAAATCTGTTAATATAAAAAAAAAGTTCTCCAGGGTGTCCTGAACCTTTAAAACTTCTTCTGTTTTCATAAACTTTTTTTTTTTAGCATTCTACCAGTTGAGAGCTCTGTGTTTTTATACTGTATTATCGTTTAAAGTACATTTTGTGTTCACAGAAGAAGAAGCGGAGGAGAATTGACCGCAGCATGATCGGAGAGCCCACAAACTTCGTTCATCTGACACACATAGGCT[C/A]GGGTGAAATGGCAGATGGCATGCAGCCGGTAAGACATGCTTTATTGTGTTGATACAGTGGCTCTGTCTCATTTCAATGTTTATGACATGGCTGTAATTAACTGTTAATGGAAGCCAAAATTGTTCTGCATGAGTTGGGTATGCACTTTGGGTATTACCAGGTTGTCACAGACATCCATTAGAATCCAAAACAGGGTTGCTAACTTGCCAGGTGTATTTGTACAAAATTCACAGCATCCACTGCCAAACCTTTTCACTTTCATTTTAGCCCTGATTAATCCACCTGTCTGAATGTGTCAAGGTTAACTACTTAACACTGGTATTGGATATATACTACAATACAATACAATAGAAATATATAAATATAATGTTACAATATTAGTAGTAGTATAGATTTGAAGACTTGGGAAGTTTGGGGAAATAAAAGTATTTTAGACCACTTTGAAAGTAGACATGATCAGGTTGTACAAATGAAAAGTAGAATCGACACTCAAAACTTAA
Associated Phenotype:
Not determined