Busch Lab

ZMP

CHL1 (1 of 2)

Ensembl ID:
ENSDARG00000076233
Description:
cell adhesion molecule with homology to L1CAM (close homolog of L1) [Source:HGNC Symbol;Acc:1939]
Human Orthologue:
CHL1
Human Description:
cell adhesion molecule with homology to L1CAM (close homolog of L1) [Source:HGNC Symbol;Acc:1939]
Mouse Orthologue:
Chl1
Mouse Description:
cell adhesion molecule with homology to L1CAM Gene [Source:MGI Symbol;Acc:MGI:1098266]

Alleles

There are 6 alleles of this gene:

Allele Name Consequence Status Availability
sa11246 Nonsense Available for shipment Available now
sa15944 Essential Splice Site Available for shipment Available now
sa33944 Nonsense Mutation detected in F1 DNA Not yet available
sa10607 Nonsense Available for shipment Available now
sa33945 Nonsense Mutation detected in F1 DNA Not yet available
sa33946 Nonsense Mutation detected in F1 DNA Not yet available

Mutation Details

Allele Name:
sa11246
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111855 Nonsense 22 1253 1 28
Genomic Location (Zv9):
Chromosome 6 (position 44851051)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 44919291
GRCz11 6 44914926
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGAAAACCCTGCTTCTTTTGGCTGCTTGCCTYAATATGAKCAGCAGGTAT[C/T]AAACTAACGCCCTGGAAATTCCACTTGATGGTAAGTAGAAGAAATGGCTT
Long Flanking Sequence:
CTGCCACACATGCACTGACAAACAGTTTACAGAAATACAATTCACGTCTCCGGGGACTCGGTGATAGGGCGCTTTAATATGGAGATTCCTCTCACAGATGCATTTCAAGTAACTACAAGTTGGGTTAGACATTGAGGCGAGTTGCTCAGCAGGAGACATGCAGAATATGCAAGTCTTTGTGTCTGCGCAGGTGACAGGGTTGTTTTTTTCATATGAGATACCGCGGGCCGACTGTTAGCATATGGTTGCTGGGAAGTCTGGGTGTGCATGGCAGTGATTCTTGTTTGCCGTTGATGTCTGGTTGCCAATAAGATCTGTGTTGTGTTTGGTGCAGGTAGCGAGACCACAGCCTGGGTTGGAGTGAGATGCACTGACTCCTGGCAGACTGCAGATTTCCCTGTCATCCTCCGCTCTCGCCTCTGAAACTGTGGCCAGTCATGCGGTTGTTACGGAAAACCCTGCTTCTTTTGGCTGCTTGCCTTAATATGAGCAGCAGGTAT[C/T]AAACTAACGCCCTGGAAATTCCACTTGATGGTAAGTAGAAGAAATGGCTTCCTGTTTTATGCAGTATTAATCTTGCAATATATCTTAACTTTACATATCTGACCATTTTTAATGCTGTTTCAGTTTAATTGTTTCCCATGTGTTCAATTGTATGCTCTCTGGAATAACAATGAATTACAGAAGCCTGTTTTCACCTCTAGCCCATTTTTATAGTAAAGAAAAAATATTTTAAATAAGTCTCTGATATTCTTAAAGTGTGTATGAGAAGTTTCTGCTCAAAATATGACACAAATAATATTTTATAACACTTTGAATCTGCCCCTTTTAGGCTTTAATCCTAATCGTGCCATTTTGTGGGCTGTTGCATTAAATTAAAATTAGATTGTCTTATTTTCAAAAGAGGGCGGAGCTACAACTGCCTGTGCATCAGCATAGTAGCAGATTCAACAACAAGACTAATGTCCTATGCTAATGAGGGAGAGATCGTCACTAATAGGCGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15944
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > G
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111855 Essential Splice Site 32 1253 1 28
Genomic Location (Zv9):
Chromosome 6 (position 44851083)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 44919323
GRCz11 6 44914958
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
AATRTGAKCAGCAGGTATYAAACTAACGCCCTGGAAATTCCACTTGATGG[T/G]AAGTAGAAGAAATGGCTTCCTGTTTYAWGCAGTATTAATCTWGCAATWTA
Long Flanking Sequence:
AAATACAATTCACGTCTCCGGGGACTCGGTGATAGGGCGCTTTAATATGGAGATTCCTCTCACAGATGCATTTCAAGTAACTACAAGTTGGGTTAGACATTGAGGCGAGTTGCTCAGCAGGAGACATGCAGAATATGCAAGTCTTTGTGTCTGCGCAGGTGACAGGGTTGTTTTTTTCATATGAGATACCGCGGGCCGACTGTTAGCATATGGTTGCTGGGAAGTCTGGGTGTGCATGGCAGTGATTCTTGTTTGCCGTTGATGTCTGGTTGCCAATAAGATCTGTGTTGTGTTTGGTGCAGGTAGCGAGACCACAGCCTGGGTTGGAGTGAGATGCACTGACTCCTGGCAGACTGCAGATTTCCCTGTCATCCTCCGCTCTCGCCTCTGAAACTGTGGCCAGTCATGCGGTTGTTACGGAAAACCCTGCTTCTTTTGGCTGCTTGCCTTAATATGAGCAGCAGGTATCAAACTAACGCCCTGGAAATTCCACTTGATGG[T/G]AAGTAGAAGAAATGGCTTCCTGTTTTATGCAGTATTAATCTTGCAATATATCTTAACTTTACATATCTGACCATTTTTAATGCTGTTTCAGTTTAATTGTTTCCCATGTGTTCAATTGTATGCTCTCTGGAATAACAATGAATTACAGAAGCCTGTTTTCACCTCTAGCCCATTTTTATAGTAAAGAAAAAATATTTTAAATAAGTCTCTGATATTCTTAAAGTGTGTATGAGAAGTTTCTGCTCAAAATATGACACAAATAATATTTTATAACACTTTGAATCTGCCCCTTTTAGGCTTTAATCCTAATCGTGCCATTTTGTGGGCTGTTGCATTAAATTAAAATTAGATTGTCTTATTTTCAAAAGAGGGCGGAGCTACAACTGCCTGTGCATCAGCATAGTAGCAGATTCAACAACAAGACTAATGTCCTATGCTAATGAGGGAGAGATCGTCACTAATAGGCGGAGTTTTCCCTCTGATGACACATACAAATGGAG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33944
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111855 Nonsense 379 1253 9 28
Genomic Location (Zv9):
Chromosome 6 (position 44867530)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 44935680
GRCz11 6 44931128
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GTATTGATCAAGTGTGTCGTGAAAGGAAATCCTCAACCTACTGTAGGATG[G/A]AGAGTTAACGGGCGGCCACTGAACGGTAGATACATGTTTCTTACAATCTT
Long Flanking Sequence:
AAATAAAAGCACAAGATATTCAGGAAAAAAGCTGGAAATATGTAACTATTGACCTCCATACTAAGCAAAACAAATACAATGGAAGTCAATGGTTTCCACTTTTCGTCAAAATGTCTACTTTTGTGTTCAACAGAGGAAAGAAAGTCATAAAGGTTTGGAACCAATTGAGGGTCAGTAAATAATAAGTAAATTTTCATTTCAGGAGAACTATCCCTTTAACACAAAAAAATAAAAAAAAAATAAAATCAAGGCTTTGAGGCATAGATATACTATTAATTTTGTCTATATTTTAAAAGCGTTTGCAAAAAAGAAAGCACTAGACTGACTCTGCTGTTAATACTGTGATTTGCATTTATCTTGTCATGTGTATAATATAATGTTTTATGTAACTCAGAGCCTCCTGAGTTTGAGATTGAACCTCAAAGCCAACTGGTGACGATTGGAGCTGATGTATTGATCAAGTGTGTCGTGAAAGGAAATCCTCAACCTACTGTAGGATG[G/A]AGAGTTAACGGGCGGCCACTGAACGGTAGATACATGTTTCTTACAATCTTACAGTAACAGTTTTATGTTTTATTTTAGTTTTTTATTTATTATATTAAATAATAATAATTAAAAAAAAACTTGAATTAAATTAAGAAAAAAATTCTAGTTTCAGTTTCTGTCCTGTACAGTATTTAGGCTTGTATTTGGATTACATATAGTATACAATTGTGTTGAAAAAATCTTCTGTCCGTTAAGCAACATTTGGGAATTTATTTTAAAGAATTAAAATTTCACAGGAGGGCTAATAATATTGAATTCAACTGCATAAATACAGTCAAACCCGAAATTATACATACTCCATATGTATAAATGTCTGATAACCTTTATTGGCAAAAAATAAAATGAATTTGTCAAAGCAACACTTTTTTTTTTTTTTTTATCTGGTCAAATATTGCATTTGCATATTTGCACTGATGTTTTTTTTTTATTTTTTTTTATTTATTTTGTTGTTGTTGTTG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10607
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111855 Nonsense 795 1253 18 28
Genomic Location (Zv9):
Chromosome 6 (position 44884385)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 45042770
GRCz11 6 44947776
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTGAAGAGGCACTCATTTCTGGTCAAAAACACCCCGACGTTCGTCCTTTA[C/A]GARATCAAAATTCAGGCCAAGAACCACGCGGGCTGGGGTCCGGACCCTAA
Long Flanking Sequence:
TTAATATTTTTACATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATTTAATATAATTTTTATTTTGTTTTAATAATTTTTTGCAATATGTATGTTGTTGTTTTTTTTACAAAATTATTCTTACTCTTATACATACATACAAAATCAGCCAGCCTAATTATAAATGTTTTAATGATTTAAAATCAGGCTAATAGATTTATAATCTATTAATACATTTTACCCAAAGTATTAGTATTTAGAACAAGAAAACAACTAAATGTTATTTTCTTTTGATTTACTCTTTCCTGTCTTCTAACCAAGCTCTTGTTTTTCCTGTCACAGCCGTTGTCACCTATTGAACACAACGGGCCTGGTCTGGAGTACAAAGTGAGCTACAGGAGACATGGCAGCGATGAAGACTGGACGGAGCGCATGGTGAAGAGGCACTCATTTCTGGTCAAAAACACCCCGACGTTCGTCCTTTA[C/A]GAGATCAAAATTCAGGCCAAGAACCACGCGGGCTGGGGTCCGGACCCTAAAATAATAACAGCGTACTCGGGAGAGGATTGTAAGTAGAAACAACCTCCATTGTGCCTGAGCCGTGAAGATGAGTGTGCATTCAAATAAGCCAATACCGTTGACATTTCACTCACTGTCAAGCATCGCGCGTCGTGCCTGTGAGAGCATACAAAGTAGCACATTCTGAAAGATGCATTGTGGTTTCTAACCTTTTCTTCATCTGTAAAGGCTCTTGTTACGCCGCAAATAAGCAATGGCTGTAAATGGAAACACACCCACCCCTCCCTGTAGCGAAAGTGCAGTACATGTGTGATGAGAATATCAACAAACCTGGAGGGCAGAGAACAATGATGAAATAGCATCTTTGCTTTAATACACAATCTCCAAACGGCAGCGACTTGTTTAGCCTTATTGAGAATATTAAATGGAACAAAGTGGGAATGATTCTCCTCACTCTGAGTTTTCGTACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33945
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111855 Nonsense 1041 1253 23 28
Genomic Location (Zv9):
Chromosome 6 (position 44905198)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 45061933
GRCz11 6 44967727
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TCTCTTCTCTCAGCGGTGTTGAATATTAGCACCTCAGTTAGTCACAACTA[T/A]GCAAATATCAGCTGGATTCCAGGCACAGAACAGACGGAGTCAGAGTTATA
Long Flanking Sequence:
CCTCTTGAATTCCCCGAATGGCAGATTTGTAGTTCTATATCGATCTTCGTGTTTACCAGCAATCTACAAGGATTAGCTTGCTGCTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATACAACATAATGTTGCAATATTCCATCTTGTGGAGAAAGCTTTTGCACCAATCGAATGTCACCATGAGCATGAAAAGAACAATTTTGCACCTATAGTTAGAATAGTGTCTCCCATTTCATTTGTGCACATTTCATCTCCATCACAAATGAGAAAATATGTAACTACGCCACATTTCATTGAAGTACTCTCTTGGAACCTCCATATGTTACAGTGAATAGAAAAAAGACATTCTTTCCCTTTCAAGTCTAACAAGCAACCCTTTCTCATGTCATTTACAGTACTAACCCTCTGTCATTTCTCTCTTCTCTCAGCGGTGTTGAATATTAGCACCTCAGTTAGTCACAACTA[T/A]GCAAATATCAGCTGGATTCCAGGCACAGAACAGACGGAGTCAGAGTTATATGTTGCCTTTATGAACAACCGTAAGCTCTTCTTACTGTTCTCCATGCTTGTTCTTGTAAATAAAGCCTTGAGGTGCAGTATTATATCGAAATTCTCTGTAGTATTTGTTTAGTGTTTAAAGTGAATTTAACATAAGACAGTTAACAATTATTGATTTGATTAGTGTTTTCTTTACATTTATTAATAGATATTTTGATTTAAAATAAAATATGCTAAGTTGTTTCAGCTCAAACTTGGGTAAACTACAGACAATTTTACCCACATTTGAGTTGAAACTACCCAGCATTTTTTTAAGTTACGAATATTAAGACATATAAATATTAAAATTTGTATTATACATAATAATTTAGTATTCGTAGGGCTGGGTATTAATTTAGATATATTTCGATTCTGTTCGATTCAGTTTCATGAGCTTTTACTTTAAATAAATTAGATCCTTGATTTGGTTGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa33946
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000111855 Nonsense 1088 1253 24 28
Genomic Location (Zv9):
Chromosome 6 (position 44907535)
Other Location(s):
Assembly Chromosome Position
GRCz10 6 45064270
GRCz11 6 44970064
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
TATCCGACATGCTAAACTCTTCTAAGACTTTCCACATCATTGAAGGGCTC[G/T]AACCTGGAACCGAATACACAGTGCGTCTTATGACAAAAAGCTGGGTTGAT
Long Flanking Sequence:
ACACCAAAACCAAGTACCAAAAAAAAAAAAAACAAGTGGTTTGATGGCTAATGGCCAAGTATGAAGAATTGAAAAGAAAAGAAAAAAATTACTCTATATATGTTTATATTTATTGATATTTGAATACATTTTAGTGTATAAACTATCATTAGACTGAATGACATTTCATTTTTTGTCTTCGGGATATCAGATATCAATTAAAGAGGTCACATTTAAATGTAAGATAATAAATTATCTAAAGCTTGTTAAACAATTATTTAATCTATGTTTTGACATTTGGTACAGTACATGCATGTATGAATTATATGAATTACACATACAGTATGTAAAATCTCTTTTGTAAACTAAAACAAAATGTCTTTGACCCATATTTATTGTAGAGATTTTGTAGTCTACTAACACCCCTTCACCCACTATGTACATCCTGTGTAGGTGAAGGTAACTGGAAGATATCCGACATGCTAAACTCTTCTAAGACTTTCCACATCATTGAAGGGCTC[G/T]AACCTGGAACCGAATACACAGTGCGTCTTATGACAAAAAGCTGGGTTGATAATTCTAGTATTTTCGAAGACGTTATCAGGACCAGGGCCAAAGGTGAGGAGAACATATAGTCTCCGAGATGACAGACATACAAACTGAAATCTTCTTCTTGTCTCTTCTTTCTCATCAAGAGTGCAAACAGCATCCTGTGATCAAATTATCATGCGTGGTGTGCTTCGTGTCCATCCCAGAGCATGTGTTCGGTGGACTTTATAAAAGAATTATGCTTTATCAGCCTCTGCTGTCGATTAATTAGACATGCAGTCTGGCATTTTAATATTAATATGGGAACATTTCCATTTGAGAGTTTGCCTGGTATCTCTCATTTAGTGTCAGATGTTCTCGGTGGATGTCAACATTGAATCATTGAATGAAGTGTCAAATTAAGGGTTGATTTGTCTTTTACAGGTCTGGCCAGCATTCATGGAAGCATCTCAAACCAGGGATGGTTCATCGGACTC
Associated Phenotype:
Not determined