Busch Lab

ZMP

ddx42

Ensembl ID:
ENSDARG00000037928
ZFIN ID:
ZDB-GENE-050706-53
Description:
ATP-dependent RNA helicase DDX42 [Source:RefSeq peptide;Acc:NP_001032894]
Human Orthologue:
DDX42
Human Description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 [Source:HGNC Symbol;Acc:18676]
Mouse Orthologue:
Ddx42
Mouse Description:
DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 Gene [Source:MGI Symbol;Acc:MGI:1919297]

Alleles

There are 2 alleles of this gene:

Allele Name Consequence Status Availability
sa10438 Nonsense Available for shipment Available now
sa521 Essential Splice Site Available for shipment Available now

Mutation Details

Allele Name:
sa10438
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000055276 Nonsense 18 402 2 12
ENSDART00000076209 Nonsense 18 910 1 18
ENSDART00000103353 Nonsense 18 438 2 9
ENSDART00000127297 Nonsense 18 908 2 18
Genomic Location (Zv9):
Chromosome 3 (position 32029458)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 31760768
GRCz11 3 31892482
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGAACTGGAACAAGGGAGGCCCAAGTGGCAAGCGAGGGTTTGGATTTGGA[G/T]GATTCGCTCTTGCGACTGGGAAGAAAGAGGAGCCTCATCTCCCACAGAAG
Long Flanking Sequence:
GTGTGCAAGATAGCCCGAAGTGGTAAATACGCTGTGGATAAATAAGGTGTCCACCCACTTTAGAAGACCGCTGTTTTCACCTTATCAGTGACAGGTAAATAAACAAAAAGCTAACAAATCTATCCAGTGCTCTTTAGCGCATGTAAAGTGAAAATAGTCGAAGTATAATCCGTACACAGACACAGCTCAAGGCCTCTCCACAATCAGCGCAGCGCTACGACACAGTGTTGTCGACCGCTTTCAGTTTGCCTGCAGTCATACTGAAAATATTTTGATATAAATATACACTTAAAATCAGCACAGTGGCTGTGATAACGATAGGATAATTACCACAATTGCGGCAGTGGACGAGAATTGTCGCGCTGCATTTATATTTCTACAGTACATTAACGTAAGGTGGATGGTATCTGCTTTTATTCCTCATTTTATTGTTTTTCAGCCCAACAACGATGAACTGGAACAAGGGAGGCCCAAGTGGCAAGCGAGGGTTTGGATTTGGA[G/T]GATTCGCTCTTGCGACTGGGAAGAAAGAGGAGCCTCATCTCCCACAGAAGGCCCACTCCTCTTTTGGGGGCACGGGACCGTCAGGTGGATATGGCAAGAATCAGCAGCTATCGTCGTTTTACAAAATAGGAACAAAACGAGCCAATTTCGACGAGGAGAACGCGTGAGTACTGCAGTTAGTCAAATACATTACACACGGAACACTTCACCTCAAAATGACATCTAAAAATAAACAGAAAGAAAATGTGTTCACATATTTGACTTGCATTTAAAAAATGTAACTTACTGAGTATTTACTCACCCTATTTACTCACCCTTAAGGCTAATTGTTAGCCTTGTTGTCCTGCTGACGCAAAAGAAGATATTTTGAAGAAAGTTGAAAACCTGTAACCATTGACATTCATAATAGGGAAAACAAATACTGTGGAAGTCAGTGGTTACAGGTTTCCAACATTTTCACGTCTTTTTTTGGTTTACCTGCAGAAAGAAACCCATAAAGG
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa521
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Mutation:
C > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000055276 None None 402 None 12
ENSDART00000076209 None 766 910 18 18
ENSDART00000103353 Essential Splice Site 330 438 8 9
ENSDART00000127297 None 764 908 18 18
Genomic Location (Zv9):
Chromosome 3 (position 32017689)
Other Location(s):
Assembly Chromosome Position
GRCz10 3 31748999
GRCz11 3 31880713
KASP Assay ID:
554-0351.1 (used for ordering genotyping assays)
KASP Sequence:
GGAGCACCTGAGGGGCCGGACAGACCTCACCTGTCCTTCTCGCCATCATC[C/T]TCTTCCTCGTTTTCCATGCCACCGCCTCCAGCTCTCACCTCAGGCATTAA
Long Flanking Sequence:
AAAGTGCTTGAAAAGTGCTGGAATTTGAAGTTGAAAAAGGTGTAAGAACCCTGATTAATATTGTTCTAATAACATTAATTTCATGCATTTAAACAGGAGCGCAGTGGTGGTTCTATTGCAGCAGCTCTTGGCAACTATGAAACCTTCAAACCCTCCACTGGAGCAATGGGAGACCGTATGTCTGCCTTAAAGCAAGCATTTCAGGTGAACACACACACATCCCATTCTCTTCACCTTGTTTTTTCCCCCTATTTGTGTCAGCTTCTTTACTATAGAGTTCAGTGTCTTGATGCACCAGTCTTTGAATTTTGTTTAACATGTTCTTGTTTCTCTTAGGCTCAGTACAAAAACCACTTTGTCGCGGCATCAGGTGTGCCTCCTAAACTCACCACAAAGTCCAGCAGCTCATCTGGATGGACCAGCGCTGGAAGTCTGAGTTCTTTGCCAACAGGAGCACCTGAGGGGCCGGACAGACCTCACCTGTCCTTCTCGCCATCATC[C/T]TCTTCCTCGTTTTCCATGCCACCGCCTCCAGCTCTCACCTCAGGCATTAAAATGAGTGGCTTCAGCAGTGCGGGCACCCTCAGCTCAATTTCAGACTCTTACTCTAGCTCTTCTTCAAAAGAGCCGTCCCGTAGCGAGAGGCACTCTGATGACAGGGGCCGGCATGGAGATAGTCATAGTCACCGTCATAGTGACAGGCATAGTGGAGGAGAGCGAGAACGAGAGAGAGAGCGTGATCGTGACCGCGATCGCCACGGGGAAAGGGACCGCCATAGTGACAGAGATCGGCATGGGGATAGCCGAAATGGTGAAGGGAGCCATAGGGACAGAGAGGGACGGTCAGAAAGAGATGAAGGTGAGAAGTCAGGGTCTCACAAAGAAAGCTTTGCAGTTCCTGATCCTCCGAAACGTAAGAAAAGCAGATGGGACAATTGAAGTGTACCAGAAAGTAGCAGTCAAATGTTCTTAGATCAGAAGGGGCTTTACTTGTCTGCTTTTTT
Associated Phenotype:
Normal
Stage Entity Quality Tag
Larval:Day 5
ZFS:0000037		 whole organism
ZFA:0001094		 quality
PATO:0000001		 normal
PATO:0000461