Busch Lab

ZMP

pcdh18b

Ensembl ID:
ENSDARG00000052494
ZFIN ID:
ZDB-GENE-080804-1
Description:
protocadherin 18b [Source:RefSeq peptide;Acc:NP_001108571]
Human Orthologue:
PCDH18
Human Description:
protocadherin 18 [Source:HGNC Symbol;Acc:14268]
Mouse Orthologue:
Pcdh18
Mouse Description:
protocadherin 18 Gene [Source:MGI Symbol;Acc:MGI:1920423]

Alleles

There are 3 alleles of this gene:

Allele Name Consequence Status Availability
sa10255 Nonsense Available for shipment Available now
sa7396 Missense Mutation detected in F1 DNA Not yet available
sa22533 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa10255
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074362 Nonsense 326 1161 1 4
Genomic Location (Zv9):
Chromosome 14 (position 44410366)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 41806312
GRCz11 14 42173566
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GGCCAYATCACTCTTATTAAGAAAGTTGMCTACGAAACCACGTCTTCATA[T/A]GAAATAGATGTGCAGGCKCAGGATATGGGTCCCAACTCCATTCCAGGCCA
Long Flanking Sequence:
ACACGCTTCCCTCTGGATAGCGCGGTAGACCCGGATGTCGGGGAAAACGCGCTGCACACCTACTCGCTCACTCGGAATAACTTTTTCAAAATCGATATCAGGACGCGAACGGACGGCGCAAAGTACGCGGACCTTGTTGTAATGAGAGAACTTGACAGGGAAACACAGTCCAGTTATCAACTACAACTCACAGCTTCAGACTCTGGCGTACCGCCGAAATCTGGCTCAACTCTGCTTAAAATCAGCATATCTGATTCCAACGATAATAGCCCGGCGTTTGACGAGCAGGCTTACGTGGTCAACCTCCTGGAAAATTCATCACTGGGGACGCTCTTGGTAGACTTGAACGCTACAGACCCGGATGAAGGCAATAATGGCAAAATCGTGTATTCTTTCAGCAGCCACGTGCCCCCCAAAATCCTAGAGACTTTCAAAATTAACCCAGATAATGGCCACATCACTCTTATTAAGAAAGTTGACTACGAAACCACGTCTTCATA[T/A]GAAATAGATGTGCAGGCTCAGGATATGGGTCCCAACTCCATTCCAGGCCACTGTAAAATAATAATCAAAGTGGTCGACGTCAACGACAACAAGCCAAAAATCAACATCAACCTCATGACTCAGGGGAAAGAGGAGGTGGCCTACATCTCAGAGGCCTCCCCTGTTGATACCTTCATCGCATTAGTGCGAGTGGATGACAGTGACTCGGGTATAAACGGTGAGGTTGTGTGCCGTCTCCATGGCCATGGGCATTTTCGCCTGCAGAAGACCTACGAGAACAACTACATGATTCTCACAAATGTGTCTCTGGACCGTGAGAAACGCTCTGAATATAGCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATCAAACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTTGAAAAGAGCCGATATGAAATCTTCAAGTCTGAGAACAATTCCCCTGGGGCATACCTGACGTCAGT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa7396
Status:
Mutation detected in F1 DNA
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Not yet available
Mutation:
T > C
Consequence:
Missense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074362 Missense 424 1161 1 4
Genomic Location (Zv9):
Chromosome 14 (position 44410659)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 41806605
GRCz11 14 42173859
KASP Assay ID:
554-4371.1 (used for ordering genotyping assays)
KASP Sequence:
CCATGGGCATTTTCGCCTSCAGAAGACCTACGAGAACAACTACATGATTC[T/C]CACAAATGTGTCTCTGGACCGTGAGAAACGCTCTGAATATAGCTTGACGG
Long Flanking Sequence:
CGTGGTCAACCTCCTGGAAAATTCATCACTGGGGACGCTCTTGGTAGACTTGAACGCTACAGACCCGGATGAAGGCAATAATGGCAAAATCGTGTATTCTTTCAGCAGCCACGTGCCCCCCAAAATCCTAGAGACTTTCAAAATTAACCCAGATAATGGCCACATCACTCTTATTAAGAAAGTTGACTACGAAACCACGTCTTCATATGAAATAGATGTGCAGGCTCAGGATATGGGTCCCAACTCCATTCCAGGCCACTGTAAAATAATAATCAAAGTGGTCGACGTCAACGACAACAAGCCAAAAATCAACATCAACCTCATGACTCAGGGGAAAGAGGAGGTGGCCTACATCTCAGAGGCCTCCCCTGTTGATACCTTCATCGCATTAGTGCGAGTGGATGACAGTGACTCGGGTATAAACGGTGAGGTTGTGTGCCGTCTCCATGGCCATGGGCATTTTCGCCTGCAGAAGACCTACGAGAACAACTACATGATTC[T/C]CACAAATGTGTCTCTGGACCGTGAGAAACGCTCTGAATATAGCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATCAAACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTTGAAAAGAGCCGATATGAAATCTTCAAGTCTGAGAACAATTCCCCTGGGGCATACCTGACGTCAGTGGTGGCCACCGACCCAGATTTGGGGCCTAATGGACAGGTGACCTACTCAATTGTGGAAAGCCAGGTCCAGGGCAGCTCCATTTCAACTTATGTTACTATTGACCCATCCAACGGGGCTGTGTATGCACTCCGAAGCTTTGATCGGGAAGAAGTTGGCCGGCTTTCGTTCACCGTGCAGGCGCGGGATGGCGGAAGCCCAGCCTTTCTGAGCAGCAACACCACTGTGTTGCTCACCATCCTAGATGAAAATGACAACCCTCCTATTATTGTTGCCCCACTGCTAAGTAACCACA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa22533
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
A > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000074362 Nonsense 455 1161 1 4
Genomic Location (Zv9):
Chromosome 14 (position 44410751)
Other Location(s):
Assembly Chromosome Position
GRCz10 14 41806697
GRCz11 14 42173951
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
GCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATC[A/T]AACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTT
Long Flanking Sequence:
TGTATTCTTTCAGCAGCCACGTGCCCCCCAAAATCCTAGAGACTTTCAAAATTAACCCAGATAATGGCCACATCACTCTTATTAAGAAAGTTGACTACGAAACCACGTCTTCATATGAAATAGATGTGCAGGCTCAGGATATGGGTCCCAACTCCATTCCAGGCCACTGTAAAATAATAATCAAAGTGGTCGACGTCAACGACAACAAGCCAAAAATCAACATCAACCTCATGACTCAGGGGAAAGAGGAGGTGGCCTACATCTCAGAGGCCTCCCCTGTTGATACCTTCATCGCATTAGTGCGAGTGGATGACAGTGACTCGGGTATAAACGGTGAGGTTGTGTGCCGTCTCCATGGCCATGGGCATTTTCGCCTGCAGAAGACCTACGAGAACAACTACATGATTCTCACAAATGTGTCTCTGGACCGTGAGAAACGCTCTGAATATAGCTTGACGGTGATCGCCGAAGACCGTGGCACGCCAAGCCTATCCACCATC[A/T]AACACTTCACAGTGCAGGTGCAGGATGAAAATGACAACCCTCCCCGCTTTGAAAAGAGCCGATATGAAATCTTCAAGTCTGAGAACAATTCCCCTGGGGCATACCTGACGTCAGTGGTGGCCACCGACCCAGATTTGGGGCCTAATGGACAGGTGACCTACTCAATTGTGGAAAGCCAGGTCCAGGGCAGCTCCATTTCAACTTATGTTACTATTGACCCATCCAACGGGGCTGTGTATGCACTCCGAAGCTTTGATCGGGAAGAAGTTGGCCGGCTTTCGTTCACCGTGCAGGCGCGGGATGGCGGAAGCCCAGCCTTTCTGAGCAGCAACACCACTGTGTTGCTCACCATCCTAGATGAAAATGACAACCCTCCTATTATTGTTGCCCCACTGCTAAGTAACCACACAGCTGAGGTACCATTATGGCGGCACGCCGAGTCTGGTCATCTGGTGACAATCATTAAGGCGACAGATCGTGATGCAGGAGCCAACAGCGAG
Associated Phenotype:
Not determined