Busch Lab

ZMP

sema3aa

Ensembl ID:
ENSDARG00000019235
ZFIN ID:
ZDB-GENE-991209-3
Description:
Semaphorin-3aa [Source:UniProtKB/Swiss-Prot;Acc:Q9W7J1]
Human Orthologue:
SEMA3A
Human Description:
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A [Source:HGNC
Mouse Orthologue:
Sema3a
Mouse Description:
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A Gene [Source:

Alleles

There are 5 alleles of this gene:

Allele Name Consequence Status Availability
sa20226 Splice Site, Nonsense Available for shipment Available now
sa13618 Essential Splice Site Available for shipment Available now
sa10272 Nonsense Available for shipment Available now
sa10241 Nonsense Available for shipment Available now
sa18414 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa20226
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
C > T
Consequence:
Splice Site, Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000051792 Splice Site, Nonsense 91 860 2 17
Genomic Location (Zv9):
Chromosome 4 (position 10398099)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 11334726
GRCz11 4 11333575
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
None
Flanking Sequence:
AGGATCACGTCTTCTCTTTTGACCTGGTCAACATCAATAGAGAAGTCAAA[C/T]AGGTGACACATAACCTCCATACACACACCACAGCCCAAATCGGTTGTCAG
Long Flanking Sequence:
TTTGTCAAATATATGCATGACTGTGTGTATTTTATACAGTATACACATAATAAATATACACTATACACACACTTAAATTATGCAAAACCATTTAATCTCATTTAAGTTTTACCCAGTTCTAATAAATATATCTGTTCTGCTGATTAAATATGGATTTTTTTTTTTCATCCAAATTAATTTTTAACAATAAAAGATGCTTTATTTAATTTGTCATTAGATCTCAAACGTGGATTTCACTCATTTGACCCACAACTTAAATAACATAAATGCTATCGTGGGACGTACACATTGAACTTTCTGCGAACTTCATGTTTGTCTTCTTTTTCTTGTTCTTTCCTTCAGAAATGCTGGAATCCAGTAATCTAGTGACTTTCACTGGTTTGGCAAACAGTTCAGGTTACGACACGTTCCTGATGGATGAGGAGAGAGGGAGATTACTGGTTGGAGCGGAGGATCACGTCTTCTCTTTTGACCTGGTCAACATCAATAGAGAAGTCAAA[C/T]AGGTGACACATAACCTCCATACACACACCACAGCCCAAATCGGTTGTCAGTTTTCTACATATAATCCTGTCCACTTCTGTTAACCAAATCTATATTAAGCTGAAATCCAAAGTTTTTATTGTAGAAATAAGTTACATACCAAAATATTGTGAACTGCACCTGATTGCTTTTTTTCCTACATAAATTAAATGTATAAATGTATTGCTTATAAAAAGTGGACATGCCAACTCACAAAGGTCTGTTTTCTACGATGCATCCCTCCAAATATATAGTAGACACATTGTCCTTATTGATGGCTCCCCAAGCATGATGTGTTTGATCACTATAATAAATATTAGTAGACTTCTTATGTGCAGAAAACAAGAAAATTGCTATTGTTATCACTTTGTGGCTATTAGACACACACACAATGATAATTTTTTTAATTGAATCCTGGTTTAATGAAGTTTCACAGTGAGTACATGGCCTAAGTCACCTTAAATTATTACTGTTTCTTAATT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa13618
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > A
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000051792 Essential Splice Site 223 860 6 17
Genomic Location (Zv9):
Chromosome 4 (position 10409601)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 11346228
GRCz11 4 11345077
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTCACATCATCCAATCAGGACGGAGCAGCATGATTCCAGATGGCTGAATG[G/A]TAAATAKTCTGATAACATTGTGATATGATTTAGKCAAGTGTCTTTAKAAG
Long Flanking Sequence:
GCTCGAGAGCACTGAATGCCTTGATGTAACAGAAGATATCTTGAGTAGAAATTGCGGCTTTTTATGAATCGAGCAAGACTTGAACAAGATCCTAATGGCACTTTTTGACATTCACCTCTCCATTATCTCTTCTGATTACTATTCACGGCTTGTTGTCGTTAGTTAATTCACTTTCCCCTTCCGCAGGACAACATCTTCAGGCTGGATGCCAGCTACTTTGAAAATGGACGTGGGAAAAGTCCCTATGATCCAAAGATGCAGTCCTCATCCCTCCTGCTTGGTAAGTCCATCAGAAATCTTGTTGTGTTGCTTTTAAATAGGTAGAATCTGTGTTTTCTGTGCTTTGGTTGGATGTTTAAATGCTATTCTTTAATGGTCAGATGGAGAGCTGTACTCGGGAACATCAGCAGACTTCATGGGACGAGACTTTGCCATTTTCCGAACACTTGGGTCACATCATCCAATCAGGACGGAGCAGCATGATTCCAGATGGCTGAATG[G/A]TAAATAGTCTGATAACATTGTGATATGATTTAGGCAAGTGTCTTTAGAAGTCGCTAAACTAAATTAAAAAATTCTATATTTCAACCATTTTACTTAAGCCATTTCCACACGTACACTGGAATTGTTATGAATGAAGTTTTCCCCACTTTTGTCTTTTTAAAAATACCTCTGTCGAAAAAAGTGCACTGCGATGCATGTTATGAGCATGCCGAACCAACAGGTGGCGATAATTAAACTTTTATTTTGAGTTCACACAAATGGGGAATTAAGTATATTTCGCGAGTAAATTGCATTCAAGTCAATGCAAACCTTAGTACAGAGGCAGATTACCATCCCTAGGTTGTGCAGAATTTGCAACACATGCTTACTCTGAAAACGTAGCCCTATATACATTTCTGGAGATCACAAATTATGTAGCCGGAAGTACAGATAGCTGCATTTCATCCTTAAAACGAATGCTACAGGTAAGGTATGACGCGGTATGAAGCTCGCCATTTATA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10272
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000051792 Nonsense 501 860 14 17
ENSDART00000051792 Nonsense 501 860 14 17
Genomic Location (Zv9):
Chromosome 4 (position 10423109)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 11359736
GRCz11 4 11358585
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAGAGAAAAGCGTGGCCTAATAGACTTATATRTTCATCTGTCAACAGCAA[C/T]AGCTGTACCTCGGWTCAGATTTAGGGATTTCCCAGATGCCYCTGCACCGC
Long Flanking Sequence:
ATGTCATTTTTTCTATGTAACACTTACTATCACAAAAAGATGCTATTGAATATCTAATATTAATCAATCCTAAATCAGATTTAGGGACCGTTCTGAAGGTGGTGACTATTCCCAGGGAGAGCTGGCATGATCTGGAGGAAGTGGTGCTGGAAGAGATGACTGTGTTTAGGGTATGAGCTCCAACTCTTCATTACCAAGAGAGCTGTGCATTTCTGCTTGCTATTGGGATCTAAATCCTCCAACTGTAATTTTCACCTCAGTACATTTAATTGCTCAGCCATAAATCTGTCTGTAGAGCCTCGGCATGTCATCAAACAAATATCCTCGGATCCTAAAATGAGATTAAACTTGCTCTGTTTTCCTTTTTAGGAGCCAACACCTATTACTGCCATGGAGCTCTCCACTAAACAAGTACGTCTGCTTGATATTACTCTTCACCAGCCATTAGCAGAGAGAAAAGCGTGGCCTAATAGACTTATATGTTCATCTGTCAACAGCAA[C/T]AGCTGTACCTCGGATCAGATTTAGGGATTTCCCAGATGCCCCTGCACCGCTGTGAGGTCTACGGGAAGGCCTGTGCCGAGTGCTGCCTGGCAAGAGATCCGTATTGTGCCTGGGATGGGACTGAATGCTCTCGGTATTTTCCAACTGCTAAAAGGTGAACACTTTTTTTCTTCTGCCTGTGTGTGGAGAAACAGGTAGCTACTCCTCACTGGATGAATCAGTGTAGCTGTATTGGTCAATGCTGAATGTGCCACAGAGGTTACTTTTTTATTGCACGTAATCATTAATGTCTTGGCACATTTAGCTGGAATAATATTAAAAATGAGATTACTTTGAAGAGGGAATAGTATACAAATGGGGTCTGGGAGTTCCAAGGGATAGACTCATTTTAATAGACTCATTAATATAAGACATGTAATAAATAAAAGAAGTAACAAACAAAAGACACGTAATTATAAAAATATATGTCAAACAAAAAGCATAATCTTCAATAAATATCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10241
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000051792 Nonsense 501 860 14 17
ENSDART00000051792 Nonsense 501 860 14 17
Genomic Location (Zv9):
Chromosome 4 (position 10423109)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 11359736
GRCz11 4 11358585
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAGAGAAAAGCGTGGCCTAATAGACTTATATRTTCATCTGTCAACAGCAA[C/T]AGCTGTACCTCGGWTCAGATTTAGGGATTTCCCAGATGCCYCTGCACCGC
Long Flanking Sequence:
ATGTCATTTTTTCTATGTAACACTTACTATCACAAAAAGATGCTATTGAATATCTAATATTAATCAATCCTAAATCAGATTTAGGGACCGTTCTGAAGGTGGTGACTATTCCCAGGGAGAGCTGGCATGATCTGGAGGAAGTGGTGCTGGAAGAGATGACTGTGTTTAGGGTATGAGCTCCAACTCTTCATTACCAAGAGAGCTGTGCATTTCTGCTTGCTATTGGGATCTAAATCCTCCAACTGTAATTTTCACCTCAGTACATTTAATTGCTCAGCCATAAATCTGTCTGTAGAGCCTCGGCATGTCATCAAACAAATATCCTCGGATCCTAAAATGAGATTAAACTTGCTCTGTTTTCCTTTTTAGGAGCCAACACCTATTACTGCCATGGAGCTCTCCACTAAACAAGTACGTCTGCTTGATATTACTCTTCACCAGCCATTAGCAGAGAGAAAAGCGTGGCCTAATAGACTTATATGTTCATCTGTCAACAGCAA[C/T]AGCTGTACCTCGGATCAGATTTAGGGATTTCCCAGATGCCCCTGCACCGCTGTGAGGTCTACGGGAAGGCCTGTGCCGAGTGCTGCCTGGCAAGAGATCCGTATTGTGCCTGGGATGGGACTGAATGCTCTCGGTATTTTCCAACTGCTAAAAGGTGAACACTTTTTTTCTTCTGCCTGTGTGTGGAGAAACAGGTAGCTACTCCTCACTGGATGAATCAGTGTAGCTGTATTGGTCAATGCTGAATGTGCCACAGAGGTTACTTTTTTATTGCACGTAATCATTAATGTCTTGGCACATTTAGCTGGAATAATATTAAAAATGAGATTACTTTGAAGAGGGAATAGTATACAAATGGGGTCTGGGAGTTCCAAGGGATAGACTCATTTTAATAGACTCATTAATATAAGACATGTAATAAATAAAAGAAGTAACAAACAAAAGACACGTAATTATAAAAATATATGTCAAACAAAAAGCATAATCTTCAATAAATATCA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa18414
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000051792 Nonsense 756 860 17 17
Genomic Location (Zv9):
Chromosome 4 (position 10431057)
Other Location(s):
Assembly Chromosome Position
GRCz10 4 11367684
GRCz11 4 11366533
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CGGAGTAAGCATAAAAAACGAGAAGACTCCTCAAACTACAGCTCAGAGCT[T/A]GCAAAACCCAACACAGAGAGCTCAAAACGCTCMCAAAGTGCCAAACAACC
Long Flanking Sequence:
TTTCCAGAACTAAGACTTAGAAGAGCATAAAGATAAGCTGAAAGTTTACCTATCATAGCTTTATAGATAAAATGTAACTGTCTTCTTTCTTTCTCTGTTTTAGATTGTGATCGATGAAAGGTTGAGTCTTACAGGCCAGGGTTTGCTAATCCGAAGTCTAACCCAGGCGGATTCAGGAGTGTTTCTCTGCCATGCCGTCGAGCACGGCTTCATCCAGCCTCTCCGGCGCATTAATCTCCAGGTCATCCCATCTCAGCGCGTGGGGGAGCTTTTGCTTCGCGCCGGCACCAACGATAAAGATCCCGCCCCAAAACACAAACTCTGGTATCGGGATTTCATGAGCCTCCTGGAGCACCCAGACCTCAACAGCGTGGACGAGTTCTGCGAGCGCATTTGGAAGCGAGAGAAGAAGCCGAAGGGGAAAAAAGCCCCCAAGGTAAACCCCGGAGCCGGAGTAAGCATAAAAAACGAGAAGACTCCTCAAACTACAGCTCAGAGCT[T/A]GCAAAACCCAACACAGAGAGCTCAAAACGCTCCCAAAGTGCCAAACAACCCGAGCGTTCAGATTTTTCCCAAGTCCACCGGATTGCAAAGAAGTCAAAGCCCTGGAGGTACGGTAAGCACTGAGAGCCAAAGCACCAAACCGGACACACAAAAGGCTTCGGAGAGCCAAAGAGCACAGCCGAACCAAGCGAAAAAAGGCCCCCAGACTCCTCAAAGAGGACCTCCTCATACTGCTAAGTGGAAACAACTTCAGGAGAACAAGAGAGGACGCAACCGCAGGACCCACGAACAGCAAAGACCACCACGCAGCGTGTAAAACGAATACACACTTGTATTAAACATCTGCATCAGTCACTCATACAACAGACAAACGTGCAGTGCGGCCATTATCGATAGCACAAAACTCAACAGCAACAAAACAAAATGGTGGAATCCTACTCATGTCTCCTGTTCACCAGGGAAAGCACATTCACTTTGTTGTTGTGATGTGACAGCAAAGA
Associated Phenotype:
Not determined