Busch Lab

ZMP

si:dkey-27a13.3

Ensembl ID:
ENSDARG00000009194
ZFIN IDs:
ZDB-GENE-041111-169, ZDB-GENE-041111-169, ZDB-GENE-060503-446
Description:
Novel protein similar to mouse procollagen, type XVI, alpha 1 (Col16a1) [Source:UniProtKB/TrEMBL;Acc
Human Orthologue:
COL16A1
Human Description:
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Mouse Orthologue:
Col16a1
Mouse Description:
collagen, type XVI, alpha 1 Gene [Source:MGI Symbol;Acc:MGI:1095396]

Alleles

There are 9 alleles of this gene:

Allele Name Consequence Status Availability
sa16684 Nonsense Available for shipment Available now
sa15494 Nonsense Available for shipment Available now
sa10058 Essential Splice Site Available for shipment Available now
sa12058 Nonsense Available for shipment Available now
sa10956 Nonsense Available for shipment Available now

Mutation Details

Allele Name:
sa16684
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
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Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013049 None None 232 None 10
ENSDART00000086717 Nonsense 203 1605 5 70
ENSDART00000143284 None None 124 None 3
Genomic Location (Zv9):
Chromosome 19 (position 40142994)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 39006977
GRCz11 19 38594097
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
TGCACGTGGACTGCAGCTCCATTGAGAACAARCCTCTGGAGCTCCGCGGC[C/T]AGTTGCCYATCAGTGGACACACRCTGTTGGGGATGAGGGCTACTGATGCT
Long Flanking Sequence:
AAAGCAATGTTCATTTTCATCTAATTAAAATCTTTAACTCAACTTTTATAGTGATTTGACTACCTTTGGACTACAAAACTTTGTGAAATAATGTTTGAATGTCTGTGAATTTAGCTTAATTTGTGCGACTTCTTGCTCATTTTGCCAGATTAGGTCACAAATAATGTATTCTAAAAGGCTACATCATGCAGCCACTACAAATATAGCAAACCCTAACTGCAGCTTCAGAGTAATTTTAAATAACTCCCTTCTTCCCCCCTCTATTTATCACACTCCTTTAGTTCTCACTGGACTGGAATGGTCCAGATGGCAACCTGGCCCTGCGGGCGAGAGGAGCCGACCCTGAAGGGCCCATGGTGGGCTGTGTGTTCGACGGAGATGGTGTGGAATCCCTGATGGACAAGCGCTGGCATAAGGTTGCTCTGAGTCTGCAGAGAGAGTCTGCCTCTTTGCACGTGGACTGCAGCTCCATTGAGAACAAGCCTCTGGAGCTCCGCGGC[C/T]AGTTGCCCATCAGTGGACACACACTGTTGGGGATGAGGGCTACTGATGCTGCCCCTGTGGAGGTAAGGAGCTCATGTGTATTGTGTACAGTGTTGTTTCATTCATTTTATTTTCGACGTAGTACCTTTATTAATCCGAAGTCGCCACAGCAGAATGAACCGCCAACTTATCTAGGATATGTTTTATGCAGCGGATGCTCTTTCAGCCACAACCCAACACTGGGAAACATCCTTACACACTCATTCACTCATATACACCACAGACAATTTTAGCTCACCCAATTCATCTATACCACATGTCTTCGGACTTGTGGGGGACACCCACTCAAAGATGGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGACCCAGCCGAGGCTCGAACCAGCGATCTTCTTGCTGTGAGGCGATTGTGCTACCCACTCACCACCGTGCTGCCCCAGTGTTGTTTCATTTGATTCATTTTTTTTTCTTTTTTTTTTTGCAATCAAATTGC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa15494
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
T > G
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013049 None None 232 None 10
ENSDART00000086717 Nonsense 687 1605 30 70
ENSDART00000143284 None None 124 None 3
Genomic Location (Zv9):
Chromosome 19 (position 40075337)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 38939320
GRCz11 19 38526440
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
CTTTTCTCTGCATTAAATATCATATCTATGTCTGTAGGGTGATCAGGRTT[T/G]ACAAGGAGACTCAGGTACACCTGGTACACCTGGAGTCGCAGGACCTCAAG
Long Flanking Sequence:
TGTTTCATGTGTGTCTACAATAATCCAATGTCACGTCAACAATCCATCTACATCAGTAATTCTCAAACTTTTTTCATCAAGTACCACCTCAGAAAAAAATTGTTCCTCCAAGTACCGCCATAAGGACCAGTATTGAAATACAGTAGCGTAGTAGGCCGAGTGAAACAGCTACACCTCTGCACAGTTTAAAAACGTGGTAAATTTACTATTATTAAAAATATTTATTAATATTGGCCACTTTAAACATTATTAATAGTAACATTAACACTGTACTCTGCTTATATGTAGATCTACATCTTTAATTTAAGGAACCTTAAACAAATGTAATATTAAAATGTAAACTTACCTTAAGAATGTTTGTCTCAACAGGGGCCACCAGGTCTTCAAGGATTCAAAGGAGAGAAAGTAAGTTATTAATATGTGCAAATAAAATGTTAACAGTACCTCAACCTTTTCTCTGCATTAAATATCATATCTATGTCTGTAGGGTGATCAGGGTT[T/G]ACAAGGAGACTCAGGTACACCTGGTACACCTGGAGTCGCAGGACCTCAAGGAGAGCCAGGCAGGAACGGTCTTAATGGACTAAAAGGAGAAAAGGTCATTGTCACATAACATTGATCATGCGGGGCTCATATTAATTACATTGCAGTAAATTATGTGCCGTCAGTGGCAATTTTAATAATCATTCATCAAGTTGATGTAATAGATTACGCCTTTAGAAAAGTATTATACATGCAAGAAAGACATCACTATTTAAGCATGCTTTGTCATCTAGAAATCTGTTTTTTCTAAACGCATCTGTGTCCGTATGACCAGGGAGATGCTTGCGACAGCTGTCCGTCACTCCCTGAAGGAAATGGAGATGTTGTTGGCTTACCGGGACCTAAGGGAGAGAGAGGAGAGCCGGGTTTGCCAGGCGAGGGCCGAGAAGGGAAACAGGTGCACATTTTTTGCTGTCTTTCTAAATTAATTAGTAGTTTTGTTGTGAGTGTTACACTTATTT
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10058
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
G > T
Consequence:
Essential Splice Site
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013049 None None 232 None 10
ENSDART00000086717 Essential Splice Site 759 1605 31 70
ENSDART00000143284 None None 124 None 3
Genomic Location (Zv9):
Chromosome 19 (position 40074900)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 38938883
GRCz11 19 38526003
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GAGARAGAGGAGAGCCGGGTTTGCCAGGCGAGGGCCGAGAAGGRAAACAG[G/T]TGCACAKTTTTTGCTGTCTTTCTMAATTAATTWGTAGTTTTGTTSTGAGT
Long Flanking Sequence:
ACAGTACCTCAACCTTTTCTCTGCATTAAATATCATATCTATGTCTGTAGGGTGATCAGGGTTTACAAGGAGACTCAGGTACACCTGGTACACCTGGAGTCGCAGGACCTCAAGGAGAGCCAGGCAGGAACGGTCTTAATGGACTAAAAGGAGAAAAGGTCATTGTCACATAACATTGATCATGCGGGGCTCATATTAATTACATTGCAGTAAATTATGTGCCGTCAGTGGCAATTTTAATAATCATTCATCAAGTTGATGTAATAGATTACGCCTTTAGAAAAGTATTATACATGCAAGAAAGACATCACTATTTAAGCATGCTTTGTCATCTAGAAATCTGTTTTTTCTAAACGCATCTGTGTCCGTATGACCAGGGAGATGCTTGCGACAGCTGTCCGTCACTCCCTGAAGGAAATGGAGATGTTGTTGGCTTACCGGGACCTAAGGGAGAGAGAGGAGAGCCGGGTTTGCCAGGCGAGGGCCGAGAAGGGAAACAG[G/T]TGCACATTTTTTGCTGTCTTTCTAAATTAATTAGTAGTTTTGTTGTGAGTGTTACACTTATTTTATCATCGAAGACTTTTAGGACAACACATACATTTAATACACAAATAAACTTCATCTATATACAGTGACATCACCTATATTACTACAGGTTAACTATGTTTACATATAATTACTTTAACTGTTGAAGAGCCTATATTATCAAATAGGTTTATAAAAAAGGTCATATTTTGGTTTTGGTGGTCTTAATCAACAGGCTGATATGCATGCAAGGTCAAAAAACACCTTCATTGTCTTATAATATGCATTTATTTTTACCTAATTATCCCAACGACTCCATATGATTCGTTCAAAGATTCATTTGTTCCCAAACCTCTTCTTAACAAGATGCTAACCTGCGCTGATTGGTCCAATGACTCAGTCTATGAACAAAAACAAAAAAAACTTGCTTATACATCTTGCAAAATCTAAACTCTTCCTTTATTTACTTCTGTAGGGTC
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa12058
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
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Mutation:
C > T
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013049 None None 232 None 10
ENSDART00000086717 Nonsense 1084 1605 49 70
ENSDART00000143284 None None 124 None 3
Genomic Location (Zv9):
Chromosome 19 (position 40044978)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 38908961
GRCz11 19 38496081
KASP Assay ID:
None (used for ordering genotyping assays)
KASP Sequence:
GTCAGCAAGGTCAAAGAGGGACAGATGGGAATCCAGGACTGAAGGGCGAA[C/T]AGGTRAGTTAACTGTACTTATGGGTGAAAWATGCTAATTTTGCAGTACCG
Long Flanking Sequence:
TGTATGGAACCAGACTGAACAACTTGTTGTTAATTACATATTTTACAGTCTCTCCTGGAAATAATACGTAAAAACTTTAACTCATCTGTGTTTTCAGATTTTGGTGAGGGGAAAAACATAACAAGGTCATTAAAACTGAAATAAATCAAGATACTTAAAAAAAAACTCTAATAAACAGGATTGATTTACAAGCCAAGCCCCAAAACAAGTTTATAGACGCTTATAATAAGACGATATGGCAACACCGCTAGAGTGCAAAAGCCACCACAAGTTTCTGATTTATGTCATTCCGTTCAGATTGCACAACATTGGTCAAAAATTGCAAATAGCAAATCCACAAGACGCCTGATAATCACTTACTACTTTTGTCAAATATTCAGTGAACAATAACTAAATTTTTATTTCGGGAGTACTTTGTCACTAATGACTTGTTTTTTTATGAAATTTAGGGTCAGCAAGGTCAAAGAGGGACAGATGGGAATCCAGGACTGAAGGGCGAA[C/T]AGGTGAGTTAACTGTACTTATGGGTGAAATATGCTAATTTTGCAGTACCGTTTAAATGAGTTGTGTTTGTTGATTTATAAAGGGTCCACCAGGAAGTCCTGGCTATCCTGGAACTATGGGACCACCCGGTCTCCCTGTGAGTAGTTACATCCTGTTGCCATATTGTTCACTAATTGTGCTTTTATATTGTTGAGTAATTGCTAAAAGTTAGCATTGTTTTTTCCCTTTTTTGTTGTTGTTGTTTTTGTTTTCAGGGACTTAAAGGAGAGCGAGGCAGTCCAGGCACTGTGGGGCTGAAAGGAGAATCAGTAAGAACAATGTTTGAACAATGCTCTAGATTATTTAAGGACCTTTTTTAGTTCATCCATAATTTTTAGGACATTCATTTTTTGATTCAAATATGTTTAAATGTTTGAAAATGCTGTTATAGTGTGGGTATATAGTTTGAAGAAAGTATTTTGCTCACTAAGAGCCTATTTAATTTGATCATAAATATGCTA
Associated Phenotype:
Not determined

Mutation Details

Allele Name:
sa10956
Status:
Available for shipment
For more information about the meaning of this status and other statuses, please see our FAQs.
Availability:
Order Allele From ZIRC
Order Allele From EZRC
Mutation:
T > A
Consequence:
Nonsense
Transcripts:
Transcript ID Consequence Amino Acid Affected Amino Acid Total Exon Affected Exon Total
ENSDART00000013049 None None 232 None 10
ENSDART00000086717 Nonsense 1227 1605 57 70
ENSDART00000143284 None None 124 None 3
Genomic Location (Zv9):
Chromosome 19 (position 40037369)
Other Location(s):
Assembly Chromosome Position
GRCz10 19 38901352
GRCz11 19 38488472
KASP Assay ID:
2261-3589.1 (used for ordering genotyping assays)
KASP Sequence:
GGGACCACCTGGAATGGAAGGACTTGATGGCAAAGATGGAAAACCAGGTT[T/A]AAGGGTCAGAAAAAMACTCTCATACAGTCTCCCATAGTTTTTNCTGGAAAA
Long Flanking Sequence:
ATTGACATAGGGTCCTGGGGGTCTGTATATGGTGATTAAAGCGAGAGATAGCATAGGTTTTTGCATAATATCCGTAAGCATAACATTAAGTGCTAATACTTCAAAGGATTTAATATGATGGATGATTCTGACACAACATTTATATTCATCTGCATTATCTCTTGCGGTCACTTTCACAAACAGACACTCTCAAATGTATGCTTTGGATGTGAGATATTGATACTTCTTCAGGGAATACTCATGCTTATTTTTCTGTTCCTCCAGGGTGTTGCTGGAGTTGCAGGCCCACAGGGGCCCACAGGTCCTCCAGGATCACCAGGGTCCCCAGGCATGCCTGTGAGTGCTAATAGGTTTTCAACACATCCAAACTTTCAGCTTATCATGACTCTGTATGCATTTATAACTTTATATGGTCATCCTGTTTTGTTTTACATTCTGTCCTTGTTTAAAGGGACCACCTGGAATGGAAGGACTTGATGGCAAAGATGGAAAACCAGGTT[T/A]AAGGGTCAGAAAAACACTCTCATACAGTCTCCCATAGTTTTTCTGGAAAATAAGTGCCCTCGTTATAAGGACTATAAGTTGCATAATGTGAAAATTGCTTCGCTTAGAGAAAGTCACAAGTTAAATTGGTGTCTTAGTCATATTTTGTAGTTTACTCCATGTGGAATGATGTAAAACATTTTGAAAATACAGTATTGTATTCTTTATTGCAATTTAATATATATGTACAAATATTTTATTAATTATGTATGCTTATAAATGTATGATTAACTTATTGGATTATTTCATAATAATATTTTTTTGTTTTCTGTAAACTACCCATGATAAATTTAATATGATAAATAACAAACAGATACACTATTTTATGTTTATAAATGTTTATATCCAATTTGAAACCACACGGTACAGATGGTTTCAGTTCAGAAGAGTTGTGAAATCAATATTTAGTGGAATAATCCTGACTTTCAATAACAAAAGTTGTAAACATTTGTTATTCTGAA
Associated Phenotype:
Not determined